Clone Name | rbastl38f05 |
---|---|
Clone Library Name | barley_pub |
>TSP1_HUMAN (P07996) Thrombospondin-1 precursor| Length = 1170 Score = 32.0 bits (71), Expect = 0.61 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284 G+ C C P S G C + +C +P NH EH C Sbjct: 568 GSWKCGACPPGYSGNGIQCTDVDECKEVPDACFNH-NGEHRC 608
>TSP1_BOVIN (Q28178) Thrombospondin-1 precursor| Length = 1170 Score = 31.6 bits (70), Expect = 0.80 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284 G+ C C P S G C + +C +P NH EH C Sbjct: 568 GSWKCGACPPGYSGDGVECKDVDECKEVPDACFNH-NGEHRC 608
>TSP1_MOUSE (P35441) Thrombospondin-1 precursor| Length = 1170 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284 G+ C C P S G C + +C +P NH EH C Sbjct: 568 GSWKCGACPPGYSGNGIQCKDVDECKEVPDACFNH-NGEHRC 608
>LY6E_CHICK (Q90986) Lymphocyte antigen Ly-6E precursor (Stem cell antigen 2)| (SCA-2) Length = 126 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 418 EKTGNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLT 278 E+ +CF CS A+SN+ C T KC NE HC+T Sbjct: 16 ERAHTLICFSCSDASSNWA--CLTPVKC----------AENEEHCVT 50
>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -3 Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVA--NHCTNEHHC 284 C +C+P T FG + C +C + S+ A N T + HC Sbjct: 803 CNRCAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHC 842
>MTAL2_PICAN (Q707Y8) Mating-type protein ALPHA2 (MATalpha2 transcription| factor) Length = 163 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 134 DKTVAIQKELCFHISQDTRLPPNDI 208 ++T+ I KEL ++QDTR PND+ Sbjct: 138 ERTLTISKELSDLLNQDTRCSPNDV 162
>LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = -3 Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVA--NHCTNEHHC 284 C +C+P T FG N C C + S A + T + HC Sbjct: 803 CNRCAPGTFGFGPNGCKPCDCHLQGSASAFCDAITGQCHC 842
>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3| precursor (rLRp105) Length = 770 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = -3 Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLTA 275 CF C P T + G N C ++EH CL A Sbjct: 452 CFSCQPGTFHCGTNLCIFETWRCDGQEDCQDGSDEHGCLAA 492
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = -3 Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLTA 275 CF C P T + G N C ++EH CL A Sbjct: 452 CFSCQPGTFHCGTNLCIFETWRCDGQEDCQDGSDEHGCLAA 492 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,249,839 Number of Sequences: 219361 Number of extensions: 1077049 Number of successful extensions: 2286 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2286 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)