ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TSP1_HUMAN (P07996) Thrombospondin-1 precursor 32 0.61
2TSP1_BOVIN (Q28178) Thrombospondin-1 precursor 32 0.80
3TSP1_MOUSE (P35441) Thrombospondin-1 precursor 31 1.0
4LY6E_CHICK (Q90986) Lymphocyte antigen Ly-6E precursor (Stem cel... 31 1.4
5LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 ... 30 2.3
6MTAL2_PICAN (Q707Y8) Mating-type protein ALPHA2 (MATalpha2 trans... 30 3.0
7LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 ... 28 8.8
8LRP3_RAT (O88204) Low-density lipoprotein receptor-related prote... 28 8.8
9LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related pro... 28 8.8

>TSP1_HUMAN (P07996) Thrombospondin-1 precursor|
          Length = 1170

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284
           G+  C  C P  S  G  C  + +C  +P    NH   EH C
Sbjct: 568 GSWKCGACPPGYSGNGIQCTDVDECKEVPDACFNH-NGEHRC 608



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>TSP1_BOVIN (Q28178) Thrombospondin-1 precursor|
          Length = 1170

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284
           G+  C  C P  S  G  C  + +C  +P    NH   EH C
Sbjct: 568 GSWKCGACPPGYSGDGVECKDVDECKEVPDACFNH-NGEHRC 608



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>TSP1_MOUSE (P35441) Thrombospondin-1 precursor|
          Length = 1170

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 409 GNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHC 284
           G+  C  C P  S  G  C  + +C  +P    NH   EH C
Sbjct: 568 GSWKCGACPPGYSGNGIQCKDVDECKEVPDACFNH-NGEHRC 608



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>LY6E_CHICK (Q90986) Lymphocyte antigen Ly-6E precursor (Stem cell antigen 2)|
           (SCA-2)
          Length = 126

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 418 EKTGNHLCFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLT 278
           E+    +CF CS A+SN+   C T  KC            NE HC+T
Sbjct: 16  ERAHTLICFSCSDASSNWA--CLTPVKC----------AENEEHCVT 50



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>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVA--NHCTNEHHC 284
           C +C+P T  FG + C   +C +  S+ A  N  T + HC
Sbjct: 803 CNRCAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHC 842



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>MTAL2_PICAN (Q707Y8) Mating-type protein ALPHA2 (MATalpha2 transcription|
           factor)
          Length = 163

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 134 DKTVAIQKELCFHISQDTRLPPNDI 208
           ++T+ I KEL   ++QDTR  PND+
Sbjct: 138 ERTLTISKELSDLLNQDTRCSPNDV 162



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>LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVA--NHCTNEHHC 284
           C +C+P T  FG N C    C +  S  A  +  T + HC
Sbjct: 803 CNRCAPGTFGFGPNGCKPCDCHLQGSASAFCDAITGQCHC 842



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>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3|
           precursor (rLRp105)
          Length = 770

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLTA 275
           CF C P T + G N C                ++EH CL A
Sbjct: 452 CFSCQPGTFHCGTNLCIFETWRCDGQEDCQDGSDEHGCLAA 492



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>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3|
           precursor (hLRp105)
          Length = 770

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 397 CFKCSPATSNFGANCCTISKCTILPSIVANHCTNEHHCLTA 275
           CF C P T + G N C                ++EH CL A
Sbjct: 452 CFSCQPGTFHCGTNLCIFETWRCDGQEDCQDGSDEHGCLAA 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,249,839
Number of Sequences: 219361
Number of extensions: 1077049
Number of successful extensions: 2286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2286
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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