>VE4_HPV16 (P06922) Probable protein E4|
          Length = 95

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 156 PTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNRHLPCSCC 323
           PT+P  P+P+     PKK + +++D+D+ Q  E       TPA        P SCC
Sbjct: 24  PTTPPRPIPKPSPWAPKKHRRLSSDQDQSQTPE-------TPA-------TPLSCC 65

>LOLB_PSEAE (P42812) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 169 LPLYLESSYTNLKRNNIWQLIEMKVRQMNGPWLP*KLQLHG 291
           L L  +S    L+++  WQ+   +  + NG WLP +L+LHG
Sbjct: 147 LTLDADSRLARLEQDG-WQIEYTRYAEQNGYWLPERLKLHG 186

>LOLB_PSEPK (Q88PX4) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 WQLIEMKVRQMNGPWLP*KLQLHG 291
           WQ+  +   + NG WLP +L+LHG
Sbjct: 163 WQVQYLSYTEQNGYWLPERLKLHG 186

>Y441_MYCPN (P75337) Hypothetical protein MPN441 (H08_orf102)|
          Length = 102

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 219 MATDRDEGQANEWPLVAMKT----PAPWVPNRHLPCSCC*CWHQVSFHP 353
           + +D+  G++  WPL   +T    P+ W P   LP  CC  +  ++  P
Sbjct: 27  LVSDKLNGKSITWPLSVPRTYLVRPSFWTPFVWLPSCCCFGFSSIASSP 75

>Y378_HALSA (Q9HS70) UPF0204 protein Vng0378c|
          Length = 390

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 90  GNKAGKLPVGGSTISHTGSAILPTSPTSP---LPRVFLHKPKKEQHMATDRDEGQAN 251
           G   G+L  GG  I H G  I P + TS       V LH+  +E+      DEG+ N
Sbjct: 335 GPAFGRL-AGGEAIEHDGRTIAPAAVTSTETVRADVALHERPRERVRRPSDDEGKGN 390

>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D|
          Length = 514

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 28/86 (32%)
 Frame = +3

Query: 114 VGGSTISHTGSAILPT------------------SPTSPLPRVF----------LHKPKK 209
           + GS + H G+A+  T                  SP  P P VF          L  P  
Sbjct: 409 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSPAG 468

Query: 210 EQHMATDRDEGQANEWPLVAMKTPAP 287
             +   DRD+G+ +  P + +  PAP
Sbjct: 469 GSYETGDRDDGRGDFGPTLGLLRPAP 494

>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D|
          Length = 521

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 28/86 (32%)
 Frame = +3

Query: 114 VGGSTISHTGSAILPT------------------SPTSPLPRVF----------LHKPKK 209
           + GS + H G+A+  T                  SP  P P VF          L  P  
Sbjct: 416 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGDGLSSPAG 475

Query: 210 EQHMATDRDEGQANEWPLVAMKTPAP 287
             +   DRD+G+ +  P + +  PAP
Sbjct: 476 GSYETGDRDDGRGDFGPTLGLLRPAP 501

>YWV3_CAEEL (Q11077) Hypothetical protein B0403.3 precursor|
          Length = 270

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 232 LSVAICCSFLGLCRKTRGRGEVGDVGRIAEPVWEIV 125
           L   +C S+   C K+RGR   GD  RI  P  +IV
Sbjct: 9   LFAVVCISY---CHKSRGRRHFGDEYRINTPACDIV 41

>J1I_HCMVA (P09711) Hypothetical protein HKRFX (J1I)|
          Length = 277

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 87  PGNKAGKLPVGGSTISHTGSAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLV 266
           PG  A  +P G +T+ HT    L  +P SP  R   +  + ++   T +D G   +    
Sbjct: 9   PGPSATPVP-GPNTVPHTPR--LRNTPASPAARTLENPRQAQRRNDTGKDRGTHRQRAET 65

Query: 267 AMKTPAPW--VPNRHLP 311
             ++P P      RH P
Sbjct: 66  PSRSPVPTTNTVGRHAP 82

>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 201 PKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNR 302
           P  E H A DR +     +P ++M    PW PNR
Sbjct: 599 PLCEMHYALDRIKDNGVLFPDISMTPTIPWSPNR 632

>TILS_SYMTH (Q67JG9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 482

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 202 GLCRKTRGRGEVGDVGRIAEPVWEIVLPPTGSFPAL 95
           G CR  R   ++G      E VW + +P   + PAL
Sbjct: 329 GRCRFARSHPQLGPGAEALEQVWPVAVPGETAIPAL 364

>LOLB_PSESM (Q888C4) Outer-membrane lipoprotein lolB precursor|
          Length = 205

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 WQLIEMKVRQMNGPWLP*KLQLHG 291
           WQ+  +   + NG WLP +++LHG
Sbjct: 163 WQVEYLSYVEQNGYWLPERVKLHG 186

>POLG_POWVL (Q04538) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3415

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
 Frame = +1

Query: 58   SHRPDETTKILE---TKLENCRWGVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 228
            S R D  T I E   T L NC W  + +     +   HL LP+ L    +   R      
Sbjct: 980  SFRNDTGTYIHELILTDLRNCTWPASHTIDNDGVLDSHLFLPVTLAGPRSKYNR------ 1033

Query: 229  IEMKVRQMNGPW 264
            I     Q+ GPW
Sbjct: 1034 IPGYSEQVRGPW 1045

>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)|
           (Myeloproliferative leukemia protein) (C-mpl) (CD110
           antigen)
          Length = 635

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 321 SSCKASDGLAPMELEFSWQPRAIHLPDLHLYQLPY 217
           S  KA  G  P EL+ SW+  A  + D   Y+L Y
Sbjct: 137 SIIKAMGGSQPGELQISWEEPAPEISDFLRYELRY 171

>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)|
            (CAIN)
          Length = 2182

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +3

Query: 111  PVGGSTISHTGSAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPW 290
            PVG +    TG          P PR+   +P +++   +   E    E  +   + PAP 
Sbjct: 1754 PVGPTEPMDTGETAARHPDLEPTPRLLPGRPPRDRGPESRSAELSLEELSISTRQQPAPL 1813

Query: 291  VPNRHLP 311
            VP+   P
Sbjct: 1814 VPSPVTP 1820

>PHK_NOCFA (Q5Z066) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 822

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 213 QHMATDRDEGQANEWPLVAMKTPAPW 290
           Q  A D  +G    WP++ ++TP  W
Sbjct: 295 QRAARDGADGSRPAWPMIVLRTPKGW 320

>NIFX_AZOVI (P14887) Protein nifX|
          Length = 158

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = +1

Query: 67  PDETTKILETKLENCRWGVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQLIEMKVR 246
           P    ++L+++ +     VA + +  +L  QH            N +R+ +  ++E    
Sbjct: 4   PTRQLQVLDSEDDGTLLKVAFASSDRELVDQHFGSSRSFAIYGVNPERSQLLSVVEFGEL 63

Query: 247 QMNG--PWLP*KLQL-HGCQTVTCLAAAADAGIRFLSTPKQPI 366
           + +G    L  K+ L  GC  V C A  A A  + ++   QPI
Sbjct: 64  EQDGNEDKLARKIDLLDGCVAVYCCACGASAVRQLMAIGVQPI 106

>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID|
            domain-containing protein 5B) (MRF1-like) (Modulator
            recognition factor protein 2) (MRF-2) (Developmentally
            and sexually retarded with transient immune abnormalities
            protein)
          Length = 1188

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 118  GVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 228
            G+  SPT +Q   +HL     + SSY +L  N+I+ L
Sbjct: 1129 GIFTSPTNSQQLYRHLAAATPVGSSYGDLLHNSIYPL 1165

>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID|
            domain-containing protein 5B) (Mrf1-like) (Modulator
            recognition factor 2) (MRF-2)
          Length = 1188

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 118  GVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 228
            G+  SPT +Q   +HL     + SSY +L  N+I+ L
Sbjct: 1129 GIFTSPTNSQQLYRHLAAATPVGSSYGDLLHNSIYPL 1165

>AL2S4_MOUSE (Q3V0J1) Amyotrophic lateral sclerosis 2 chromosomal region|
           candidate gene 4 protein homolog
          Length = 427

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 STISHTGSAILPTSPTSPLPRVFLHKPKKEQHMATDRDE 239
           ST+ H      PT  + P+ +VF+ K ++ Q  A DR E
Sbjct: 180 STLEHHSRFTAPTGVSQPVGKVFVEKSRRFQ--AADRSE 216

>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial|
           precursor (ATP-binding cassette transporter 10) (ABC
           transporter 10 protein) (Mitochondrial ATP-binding
           cassette 2) (M-ABC2)
          Length = 738

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 WPLVAMKTPAPWVPNRHLPCSC 320
           WPL  ++ P+P  P R LP +C
Sbjct: 7   WPLRLLEPPSPAEPGRLLPVAC 28


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,597,684
Number of Sequences: 219361
Number of extensions: 1273308
Number of successful extensions: 3517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3512
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)