ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 9e-14
2gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare str... 86 9e-14
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
4dbj|AK064767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
5dbj|AK058297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
6gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
7gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
8gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10dbj|AK120792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
12ref|NM_194677.1| Oryza sativa (japonica cultivar-group) unknown ... 46 0.079
13emb|AL360078.16| Human DNA sequence from clone RP11-530N10 on ch... 44 0.31
14emb|AL157830.10| Human DNA sequence from clone RP11-332M12 on ch... 44 0.31
15gb|AC161760.4| Mus musculus BAC clone RP23-428J22 from chromosom... 44 0.31
16gb|AY752793.1| Culicoides sonorensis clone CsARU unknown mRNA 42 1.2
17ref|XM_878436.1| PREDICTED: Bos taurus similar to phosphatidylin... 42 1.2
18emb|AL833788.9| Mouse DNA sequence from clone RP23-99E6 on chrom... 42 1.2
19gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 42 1.2
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.2
21gb|AC101763.8| Mus musculus chromosome 1, clone RP24-468E2, comp... 40 4.9
22gb|AY533230.1| Chinchilla lanigera ribosomal protein S27a mRNA, ... 40 4.9
23gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 4.9
24gb|AC124731.5| Mus musculus BAC clone RP23-287B7 from 3, complet... 40 4.9
25emb|AL772202.14| Human DNA sequence from clone RP11-791O21 on ch... 40 4.9
26emb|AL844602.6| Mouse DNA sequence from clone RP24-251H18 on chr... 40 4.9
27emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in... 40 4.9
28ref|NM_001032408.1| Drosophila melanogaster kayak CG33956-RD, tr... 40 4.9
29gb|AC012378.10| Homo sapiens chromosome 15 clone RP11-420M1 map ... 40 4.9
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
31gb|AC007892.4|AC007892 Drosophila melanogaster, chromosome 3R, r... 40 4.9
32gb|AC093159.3| Homo sapiens BAC clone RP11-642D6 from 2, complet... 40 4.9
33gb|AF483190.1| Melaleuca alternifolia isopentenyl pyrophosphate ... 40 4.9
34gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, c... 40 4.9
35dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
36gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cance... 40 4.9
37gb|AC153636.2| Mus musculus 6 BAC RP23-76E12 (Roswell Park Cance... 40 4.9
38gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 10... 40 4.9
39emb|BX537149.1| Mouse DNA sequence from clone RP23-251H18 on chr... 40 4.9
40emb|CT030657.5| Mouse DNA sequence from clone RP23-142A12 on chr... 40 4.9
41gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence,... 40 4.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                           
Query: 192     ctacacaaacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaat 251
               ||||||||||||| || ||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct: 7452628 ctacacaaacctagaatggaaccacatatggcaactgatagacatgaaggtctggtaaat 7452569

                                          
Query: 252     gaatggcccttggttgccatgaaaact 278
               |||| ||||| || ||| |||| ||||
Sbjct: 7452568 gaatcgccctaggctgcaatgagaact 7452542
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>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                         
Query: 192   ctacacaaacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaat 251
             ||||||||||||| || ||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct: 91183 ctacacaaacctagaatggaaccacatatggcaactgatagacatgaaggtctggtaaat 91124

                                        
Query: 252   gaatggcccttggttgccatgaaaact 278
             |||| ||||| || ||| |||| ||||
Sbjct: 91123 gaatcgccctaggctgcaatgagaact 91097
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                           
Query: 192     ctacacaaacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaat 251
               ||||||||||||| || ||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct: 7450463 ctacacaaacctagaatggaaccacatatggcaactgatagacatgaaggtctggtaaat 7450404

                                          
Query: 252     gaatggcccttggttgccatgaaaact 278
               |||| ||||| || ||| |||| ||||
Sbjct: 7450403 gaatcgccctaggctgcaatgagaact 7450377
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>dbj|AK064767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A02, full
            insert sequence
          Length = 2755

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  ctacacaaacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaat 251
            ||||||||||||| || ||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct: 2572 ctacacaaacctagaatggaaccacatatggcaactgatagacatgaaggtctggtaaat 2513

                                       
Query: 252  gaatggcccttggttgccatgaaaact 278
            |||| ||||| || ||| |||| ||||
Sbjct: 2512 gaatcgccctaggctgcaatgagaact 2486
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>dbj|AK058297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F05, full
           insert sequence
          Length = 1130

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 ctacacaaacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaat 251
           ||||||||||||| || ||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct: 927 ctacacaaacctagaatggaaccacatatggcaactgatagacatgaaggtctggtaaat 868

                                      
Query: 252 gaatggcccttggttgccatgaaaact 278
           |||| ||||| || ||| |||| ||||
Sbjct: 867 gaatcgccctaggctgcaatgagaact 841
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>gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0056A20, complete sequence
          Length = 151163

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 199   aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
             |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 33586 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 33533
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 199     aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
               |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 1515013 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 1514960
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>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09,
              complete sequence
          Length = 154181

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 199    aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
              |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 127767 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 127714
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 199     aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
               |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 1515013 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 1514960
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>dbj|AK120792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011O11, full
            insert sequence
          Length = 1905

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 199  aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
            |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 1723 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 1670
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 199     aacctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
               |||||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 1515010 aacctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 1514957
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>ref|NM_194677.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0056A20.6), mRNA
          Length = 1563

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 202  ctaaaaaggaacaacatatggcaactgatagagatgaaggtcaggcaaatg 252
            ||||||||| |||||| | |||| |||||| | | ||||||||||||||||
Sbjct: 1563 ctaaaaaggcacaacaaacggcagctgatacataagaaggtcaggcaaatg 1513
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>emb|AL360078.16| Human DNA sequence from clone RP11-530N10 on chromosome 20 Contains
            the DEFB126 gene for defensin beta 126, the DEFB127 gene
            for defensin beta 127, the DEFB129 gene for defensin beta
            129, the DEFB125 gene for defensin beta 125 and the
            DEFB128 gene for defensin beta 128, complete sequence
          Length = 164123

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 10   acaaaagattaagtcaaatggattaa 35
            |||||| |||||||||||||||||||
Sbjct: 4712 acaaaacattaagtcaaatggattaa 4687
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>emb|AL157830.10| Human DNA sequence from clone RP11-332M12 on chromosome 9p24.1-24.3,
             complete sequence
          Length = 168621

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    attaagtcaaatggattaacaa 38
             ||||||||||||||||||||||
Sbjct: 31006 attaagtcaaatggattaacaa 31027
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>gb|AC161760.4| Mus musculus BAC clone RP23-428J22 from chromosome 14, complete sequence
          Length = 187639

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 317    ctgctgctgatgctggcatcaggtttcttt 346
              |||||||||||||| ||||||| |||||||
Sbjct: 142571 ctgctgctgatgcttgcatcagatttcttt 142542
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>gb|AY752793.1| Culicoides sonorensis clone CsARU unknown mRNA
          Length = 569

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 267 gccatgaaaactccagctcca 287
           |||||||||||||||||||||
Sbjct: 416 gccatgaaaactccagctcca 396
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>ref|XM_878436.1| PREDICTED: Bos taurus similar to phosphatidylinositol glycan, class
           Q isoform 2, transcript variant 2 (LOC508048), mRNA
          Length = 2049

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 316 gctgctgctgatgctggcatc 336
           |||||||||||||||||||||
Sbjct: 458 gctgctgctgatgctggcatc 478
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>emb|AL833788.9| Mouse DNA sequence from clone RP23-99E6 on chromosome X, complete
              sequence
          Length = 167868

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 75     aacaacaaaaatcctggaaacaaag 99
              ||||| |||||||||||||||||||
Sbjct: 120843 aacaaaaaaaatcctggaaacaaag 120867
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>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     tgaaacaacaaaaatcctgga 92
              |||||||||||||||||||||
Sbjct: 106534 tgaaacaacaaaaatcctgga 106514
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 303     cacttgccttgcagctgctgc 323
               |||||||||||||||||||||
Sbjct: 3946932 cacttgccttgcagctgctgc 3946912



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 306     ttgccttgcagctgctgctgatgctggc 333
               |||||||||||| ||||||| |||||||
Sbjct: 1711629 ttgccttgcagcagctgctggtgctggc 1711656
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>gb|AC101763.8| Mus musculus chromosome 1, clone RP24-468E2, complete sequence
          Length = 143657

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ctgctgctgatgctggcatc 336
             ||||||||||||||||||||
Sbjct: 87327 ctgctgctgatgctggcatc 87346
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>gb|AY533230.1| Chinchilla lanigera ribosomal protein S27a mRNA, partial cds
          Length = 404

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 gccatgaaaactccagctcc 286
           ||||||||||||||||||||
Sbjct: 275 gccatgaaaactccagctcc 256
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 308     gccttgcagctgctgctgatgctg 331
               ||||||| ||||||||||||||||
Sbjct: 2581293 gccttgccgctgctgctgatgctg 2581270
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>gb|AC124731.5| Mus musculus BAC clone RP23-287B7 from 3, complete sequence
          Length = 201529

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    ctgctgctgatgctggcatc 336
              ||||||||||||||||||||
Sbjct: 157068 ctgctgctgatgctggcatc 157049
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>emb|AL772202.14| Human DNA sequence from clone RP11-791O21 on chromosome 9 Contains a
             PEST-containing nuclear protein (PEST) pseudogene, a novel
             gene (FLJ37523), a novel gene, the EDG3 gene for
             endothelial differentiation, sphingolipid
             G-protein-coupled receptor, 3 and a CpG island, complete
             sequence
          Length = 55956

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   agagatgaaggtcaggcaaa 250
             ||||||||||||||||||||
Sbjct: 16979 agagatgaaggtcaggcaaa 16998
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>emb|AL844602.6| Mouse DNA sequence from clone RP24-251H18 on chromosome 4, complete
             sequence
          Length = 116028

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ctgctgctgatgctggcatc 336
             ||||||||||||||||||||
Sbjct: 90636 ctgctgctgatgctggcatc 90655
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>emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in linkage group 3,
             complete sequence
          Length = 151079

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ccttggttgccatgaaaact 278
             ||||||||||||||||||||
Sbjct: 25482 ccttggttgccatgaaaact 25463
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>ref|NM_001032408.1| Drosophila melanogaster kayak CG33956-RD, transcript variant D
           (kay), mRNA
          Length = 3261

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 tgcagctgctgctgatgctg 331
           ||||||||||||||||||||
Sbjct: 116 tgcagctgctgctgatgctg 97
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>gb|AC012378.10| Homo sapiens chromosome 15 clone RP11-420M1 map 15q21.3, complete
             sequence
          Length = 199289

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    taagtcaaatggattaacaa 38
             ||||||||||||||||||||
Sbjct: 85858 taagtcaaatggattaacaa 85877
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 316      gctgctgctgatgctggcat 335
                ||||||||||||||||||||
Sbjct: 24045668 gctgctgctgatgctggcat 24045687
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>gb|AC007892.4|AC007892 Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone
              BACR02O03, complete sequence
          Length = 202929

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tgcagctgctgctgatgctg 331
              ||||||||||||||||||||
Sbjct: 121934 tgcagctgctgctgatgctg 121915
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>gb|AC093159.3| Homo sapiens BAC clone RP11-642D6 from 2, complete sequence
          Length = 186561

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gattaacaacaccacagaag 49
             ||||||||||||||||||||
Sbjct: 44495 gattaacaacaccacagaag 44476
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>gb|AF483190.1| Melaleuca alternifolia isopentenyl pyrophosphate isomerase IDI2
           (idi2) mRNA, complete cds
          Length = 1063

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 gctgctgctgatgctggcat 335
           ||||||||||||||||||||
Sbjct: 50  gctgctgctgatgctggcat 69
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>gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, complete sequence
          Length = 200131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    ctgctgctgatgctggcatc 336
              ||||||||||||||||||||
Sbjct: 196152 ctgctgctgatgctggcatc 196133
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   gctgctgctgatgctggcat 335
             ||||||||||||||||||||
Sbjct: 55361 gctgctgctgatgctggcat 55380
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>gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 195675

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    ctgctgctgatgctggcatc 336
              ||||||||||||||||||||
Sbjct: 182906 ctgctgctgatgctggcatc 182887
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>gb|AC153636.2| Mus musculus 6 BAC RP23-76E12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 164242

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   ctgctgctgatgctggcatc 336
             ||||||||||||||||||||
Sbjct: 35723 ctgctgctgatgctggcatc 35704
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>gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 109 of 118 of the
             complete sequence
          Length = 242528

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tgcagctgctgctgatgctg 331
             ||||||||||||||||||||
Sbjct: 33164 tgcagctgctgctgatgctg 33145
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>emb|BX537149.1| Mouse DNA sequence from clone RP23-251H18 on chromosome 4, complete
             sequence
          Length = 112029

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ctgctgctgatgctggcatc 336
             ||||||||||||||||||||
Sbjct: 88637 ctgctgctgatgctggcatc 88656
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>emb|CT030657.5| Mouse DNA sequence from clone RP23-142A12 on chromosome 13, complete
              sequence
          Length = 201402

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ctgctgctgatgctggcatc 336
              ||||||||||||||||||||
Sbjct: 133587 ctgctgctgatgctggcatc 133606
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>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C)
          Length = 158230

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 308   gccttgcagctgctgctgatgctg 331
             ||||||| ||||||||||||||||
Sbjct: 59577 gccttgccgctgctgctgatgctg 59600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,471,041
Number of Sequences: 3902068
Number of extensions: 4471041
Number of successful extensions: 106761
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106479
Number of HSP's gapped (non-prelim): 282
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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