ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 33 0.21
2CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (... 32 0.48
3RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RL... 31 1.4
4THYG_RAT (P06882) Thyroglobulin precursor 30 2.4
5SMAD6_CHICK (Q9W734) Mothers against decapentaplegic homolog 6 (... 30 3.1
6TIM21_GIBZE (Q4HZ95) Import inner membrane translocase subunit T... 29 4.0
7SIRK_ARATH (O64483) Senescence-induced receptor-like serine/thre... 29 4.0
83BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2) 29 4.0
9Y1688_HALSA (Q06847) Hypothetical protein Vng1688c 29 5.3
10KIN31_CAEEL (P34265) Probable tyrosine-protein kinase kin-31 (EC... 29 5.3
11EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 28 6.9
121433_FUCVE (Q39757) 14-3-3-like protein 28 9.0
13EFTS_RICTY (Q68XV6) Elongation factor Ts (EF-Ts) 28 9.0
14CNN_DROME (P54623) Centrosomin (Protein arrow) 28 9.0
15LCK_HUMAN (P06239) Proto-oncogene tyrosine-protein kinase LCK (E... 28 9.0

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -1

Query: 413 EVKRMFQLALLCSKRQPSDRPTMHDVAHVL 324
           EV+++ Q+ALLC++  P +RP M +V  +L
Sbjct: 534 EVEQLIQVALLCTQSSPMERPKMSEVVRML 563



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>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)|
          Length = 980

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -1

Query: 419  LGEVKRMFQLALLCSKRQPSDRPTMHDVAHVLSCLVCPEAPPKA 288
            L  V  +F++A++C + + + RPTM +V H+L+       PPK+
Sbjct: 936  LTSVIHVFKIAMMCVEEEAAARPTMREVVHMLT------NPPKS 973



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>RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RLCKVII (EC|
           2.7.11.1)
          Length = 423

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 392 LALLCSKRQPSDRPTMHDVAHVLSCLVCPEAPPKAGSPQSSTAPSY 255
           ++ +C + QP+ RP + DV   L+ L   +  P + S  S   PS+
Sbjct: 355 ISAMCVQEQPTMRPVVSDVVLALNFLASSKYDPNSPSSSSGKNPSF 400



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>THYG_RAT (P06882) Thyroglobulin precursor|
          Length = 2768

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 268  VDDWGDPAFGGASGQTRQLRTCATSCIVGRSDG 366
            VD WG+   G    ++ Q+  C TSC + R++G
Sbjct: 1053 VDGWGELIPGSLMARSSQMPQCPTSCELSRANG 1085



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>SMAD6_CHICK (Q9W734) Mothers against decapentaplegic homolog 6 (SMAD 6)|
           (Mothers against DPP homolog 6) (Smad6)
          Length = 431

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 327 PQLPGLPRSAPEGGVAPV-VHGPELRERVCQPERRQRPVLCQLVERVRRGAL 175
           P+LP  P   P GG +P    G E R R+   ER  + V   L++R++  +L
Sbjct: 71  PELPPPPPPPPPGGASPPGPGGGEARSRLVLLERELKAVTYALLKRLKERSL 122



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>TIM21_GIBZE (Q4HZ95) Import inner membrane translocase subunit TIM21,|
           mitochondrial precursor
          Length = 229

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +1

Query: 1   GQKRSIFTVNRASPQIQWPLLFFKTISENATLQSASW------MGLSGGQVYSVFCEIAS 162
           G KR   T    +  + W  L     +  AT QS ++      + L+GG  Y ++ ++ S
Sbjct: 43  GPKRRAVTPFNDNGHVPWKQLSVAEKAARATQQSFNFGMILVGLMLTGGVGYFLWTDVFS 102

Query: 163 PNLRKSSASDALDELAQD 216
           P+ + S+ + A+D++  D
Sbjct: 103 PDSKISNFNRAVDKIRSD 120



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>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein|
           kinase precursor (FLG22-induced receptor-like kinase 1)
          Length = 876

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 422 DLGEVKRMFQLALLCSKRQPSDRPTMHDVAHVLSCLV 312
           D+G   +M ++AL C++   + RPTM  V   L  +V
Sbjct: 810 DVGSAWKMSEIALACTEHTSAQRPTMSQVVMELKQIV 846



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>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)|
          Length = 559

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 362 SDRPTMHDVAHVLSCLVCPEAPPKAGSPQSSTAPSYVNEYVSLR 231
           SD P  H         + P  PPK G P + +AP    + + LR
Sbjct: 218 SDLPRAHSFTSKSPSPLLPPPPPKRGLPDTGSAPEDAKDALGLR 261



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>Y1688_HALSA (Q06847) Hypothetical protein Vng1688c|
          Length = 283

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 124 GGQVYSVFCEIASPNLRKSSASDALDELAQDRALAPLRLT 243
           GG V +V    A+P   +  A D  DELA    L PLRL+
Sbjct: 54  GGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPLRLS 93



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>KIN31_CAEEL (P34265) Probable tyrosine-protein kinase kin-31 (EC 2.7.10.2)|
          Length = 437

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 380 CSKRQPSDRPTMHDVAHVL 324
           C    P+DRPTM DVA +L
Sbjct: 358 CCAENPNDRPTMSDVAQIL 376



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>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
            (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
            MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 404  RMFQLALLCSKRQPSDRPTMHDVAHVL 324
            R+ Q+A+LC    P+ RP M DV   L
Sbjct: 1163 RLLQIAMLCLAETPAKRPNMLDVLKAL 1189



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>1433_FUCVE (Q39757) 14-3-3-like protein|
          Length = 251

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 127 GQVYSVFCEIASPNLRKSSASDALD--ELAQDRALAPLRLTY 246
           G  +    E  S + RK+SASDALD  +LA D A   L  T+
Sbjct: 123 GDYHRYLAEFQSADERKTSASDALDAYQLASDHANQDLPPTH 164



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>EFTS_RICTY (Q68XV6) Elongation factor Ts (EF-Ts)|
          Length = 309

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 73  TISENATLQSASWMGLSGGQVYSVFCEIASPNLRKSSASDALDELAQDRA 222
           TI EN TL+    + +S G + S       P+L K S    L+  A+D+A
Sbjct: 132 TIGENLTLRRMDILEISNGAIGSYVHNEVVPHLGKISVLVGLESNAKDKA 181



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>CNN_DROME (P54623) Centrosomin (Protein arrow)|
          Length = 1320

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 261  ELRERVCQPERRQRPVLCQLVERVRRGALPQVRRGDLTE 145
            +L E++ Q + R   V CQ+VE   R    Q+R  D+T+
Sbjct: 898  QLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQ 936



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>LCK_HUMAN (P06239) Proto-oncogene tyrosine-protein kinase LCK (EC 2.7.10.2)|
           (p56-LCK) (Lymphocyte cell-specific protein-tyrosine
           kinase) (LSK) (T cell-specific protein-tyrosine kinase)
          Length = 508

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 407 KRMFQLALLCSKRQPSDRPTMHDVAHVL 324
           + ++QL  LC K +P DRPT   +  VL
Sbjct: 466 EELYQLMRLCWKERPEDRPTFDYLRSVL 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,188,119
Number of Sequences: 219361
Number of extensions: 925684
Number of successful extensions: 2938
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2938
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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