ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 31 1.8
2SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 31 1.8
3SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 31 1.8
4SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 31 1.8
5NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 30 2.3
6URED_SYNY3 (P73047) Urease accessory protein ureD 30 4.0
7DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 8.9
8SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 8.9
9SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 8.9
10DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 8.9
11DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 8.9
12CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E... 28 8.9

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 405 QEKAKKERLRLWQYGDVESD 346
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 405 QEKAKKERLRLWQYGDVESD 346
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 405 QEKAKKERLRLWQYGDVESD 346
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 405 QEKAKKERLRLWQYGDVESD 346
           QE AK  RL LW+YGD  +D
Sbjct: 881 QESAKSARLNLWRYGDFRAD 900



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 285 CLLSSTDAAGVSSRLELALPRRIQ 356
           C  S TD AG +SRL L LP RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 310 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 185
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 377 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 285
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 83  VLPLQRRNAVHKGHRP 130
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 83  VLPLQRRNAVHKGHRP 130
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 377 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 285
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 377 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 285
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 465 KGQEMDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 352
           K ++ D KE+K   E  ++ ++K KKE+ R  + GD E
Sbjct: 437 KKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,907,600
Number of Sequences: 219361
Number of extensions: 1027459
Number of successful extensions: 3049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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