ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38e07 |
|---|---|
| Clone Library Name | barley_pub |
>YHI0_YEAST (P38708) Putative prolyl-tRNA synthetase YHR020W (EC 6.1.1.15)| (Proline--tRNA ligase) (ProRS) Length = 688 Score = 66.2 bits (160), Expect = 3e-11 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 13/92 (14%) Frame = -2 Query: 445 VIISTWDEFIAALNDKKLILAPWCDEEEVEKDVKART-------------KGELGAAETL 305 VI++ W F+ ALN K +ILAPWC E E+D+K + K A++L Sbjct: 597 VIVNEWSGFVPALNKKNVILAPWCGVMECEEDIKESSAKKDDGEEFEEDDKAPSMGAKSL 656 Query: 304 CTPFDQPDLPSGTVCFASGKPAQKWSFWGRSY 209 C PFDQP L G C + A + +GRSY Sbjct: 657 CIPFDQPVLNEGQKCIKCERIAVNYCMFGRSY 688
>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1714 Score = 46.6 bits (109), Expect = 3e-05 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 12/89 (13%) Frame = -2 Query: 439 ISTWDEFIAALNDKKLILAPWCDEEEVEKDVKART----KGELGA----AETLCTPFDQP 284 ++ W +F L K ++LAP+C E E +KA + + E GA A++LC PFDQP Sbjct: 1627 VTNWTDFCGFLEQKNILLAPFCGEISCEDKIKADSARGEEAEPGAPAMGAKSLCIPFDQP 1686 Query: 283 -DLPSGTVCF---ASGKPAQKWSFWGRSY 209 + + C + KP + ++ +GRSY Sbjct: 1687 APIAASDKCINPSCTNKP-KFYTLFGRSY 1714
>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1440 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Frame = -2 Query: 448 IVIISTWDEFIAALNDKKLILAPWCDEEEVEKDVKARTKG----ELGA----AETLCTPF 293 +V+ +T ++F L+ K++ P+C E + E +K T E GA A++LC PF Sbjct: 1352 MVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPF 1411 Query: 292 DQP-DLPSGTVCFASGKPAQKWSFWGRSY 209 +L G C PA+ ++ +GRSY Sbjct: 1412 KPLCELQPGAKCVCGKNPAKYYTLFGRSY 1440
>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1512 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Frame = -2 Query: 448 IVIISTWDEFIAALNDKKLILAPWCDEEEVEKDVKARTKG----ELGA----AETLCTPF 293 +V+ +T ++F L+ K+ P+C E + E +K T E GA A++LC PF Sbjct: 1424 MVVSNTLEDFQKVLDAGKVAQIPFCGEIDCEDWIKKMTARDQDVEPGAPSMGAKSLCIPF 1483 Query: 292 DQP-DLPSGTVCFASGKPAQKWSFWGRSY 209 + +L G +C PA+ ++ +GRSY Sbjct: 1484 NPLCELQPGAMCVCGKNPAKFYTLFGRSY 1512
>SYP_CLOST (Q9L4Q8) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 481 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = -2 Query: 379 WCDEEEVEKDVKARTKGELGAAETLCTPFDQPDLPSGTVCFASGKPAQKWSFWGRSY 209 WC EEE E +K T C PF Q +L G C GKPA+ + ++Y Sbjct: 432 WCGEEECEAKIKEDT-----GVTIRCIPFVQENL--GETCQFCGKPAKHMVYLAKAY 481
>VGLM_EBV (P03215) Glycoprotein M| Length = 405 Score = 32.7 bits (73), Expect = 0.43 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = -2 Query: 199 CSATYTLPFSLSV--CSGKSVYFHFIDRLFWQICLFLILPDF*VMLS 65 C A TL FSLSV G S YF D + + LFLILP F +L+ Sbjct: 212 CLALETLVFSLSVFLALGNSFYFMVGDMVLGAVNLFLILPIFWYILT 258
>CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 450 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = +1 Query: 145 QICQNKRTMKMAMYRWQNTGINSCGPRMTTFEQAFQKQSTRFRKEDLAGQMEYTRFPQLQ 324 ++C K+ ++ + N G M +E F + RK L E R PQ++ Sbjct: 314 KVCPGKKAKELPGQSFDNKGYFCGEETMPVYESVFMEDGETTRKIAL----ETERPPQVE 369 Query: 325 VHLWS 339 VH+W+ Sbjct: 370 VHVWT 374
>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 370 EEEVEKDVKARTKGELGAAETLCT-PF--DQPDLPSGTVCFASGKPAQ 236 E E +K AR G AE L P D P+ P VC+ +GKPAQ Sbjct: 88 EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 135
>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 370 EEEVEKDVKARTKGELGAAETLCT-PF--DQPDLPSGTVCFASGKPAQ 236 E E +K AR G AE L P D P+ P VC+ +GKPAQ Sbjct: 88 EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 135
>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 370 EEEVEKDVKARTKGELGAAETLCT-PF--DQPDLPSGTVCFASGKPAQ 236 E E +K AR G AE L P D P+ P VC+ +GKPAQ Sbjct: 88 EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 135
>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 370 EEEVEKDVKARTKGELGAAETLCT-PF--DQPDLPSGTVCFASGKPAQ 236 E E +K AR G AE L P D P+ P VC+ +GKPAQ Sbjct: 88 EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 135
>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 370 EEEVEKDVKARTKGELGAAETLCT-PF--DQPDLPSGTVCFASGKPAQ 236 E E +K AR G AE L P D P+ P VC+ +GKPAQ Sbjct: 88 EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQ 135
>GNT1_GIBZE (Q4HVS2) Glucose N-acetyltransferase 1 (EC 2.4.1.-)| (N-acetylglucosaminyltransferase) Length = 431 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Frame = -2 Query: 430 WDEFIAALNDKKLILAPWCDEEEVEKDVKARTKGELGAAETLCTPFDQPDLPSGT---VC 260 WD +A K + + W + DV+ R +QPD P VC Sbjct: 369 WDSSVALSEAKFVHFSDWPVPKPWINDVETRLA-------------NQPDCPEDNKKRVC 415 Query: 259 FASGKPAQKWSFWGR 215 + GK QKW W R Sbjct: 416 ESVGKTGQKWIHWRR 430
>CT012_HUMAN (Q9NVP4) Protein C20orf12| Length = 579 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -2 Query: 313 ETLCTPFDQPDLPS---GTV-CFASGKPAQKWSFWGRSY*SLCSATYTLPFSLSVC 158 E++C+ P P+ GT+ C+ G+ W+ W S+ C A +P SVC Sbjct: 145 ESMCSGDKAPPPPTQKGGTISCYRCGR----WNLWEASFCGWCGAMLGIPAGCSVC 196
>OR8K5_HUMAN (Q8NH50) Olfactory receptor 8K5| Length = 307 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Frame = -3 Query: 168 CPFVLANLFI---SISLTVCSGKSVYFLYYLIFE*CFRMITATVDWLSIC----YFVMIA 10 CP VLAN + +IS C+ + +FL ++I E A +++IC Y+V+++ Sbjct: 78 CPKVLANFVVDRNTISYYACAAQLAFFLMFIISEFFILSAMAYDRYVAICNPLLYYVIMS 137 Query: 9 CR 4 R Sbjct: 138 QR 139
>Y674_VIBPA (Q87RV2) UPF0255 protein VP0674| Length = 415 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +2 Query: 233 LLSRLSRSKAHGSGRKIWLVKWS--TQGFRSSKFTFGPSFHVLLDLLLITPWSQDQLFVI 406 L SRL +S + ++ WS QGF SS+ T P + L+ ++P+S +QL + Sbjct: 320 LASRLGKSAVDINSMAGQMMAWSLKVQGFLSSRKTKVPILALSLEGDPVSPYSDNQLVAL 379 Query: 407 ESCY 418 S Y Sbjct: 380 FSHY 383
>YA00_RHIME (Q52967) Hypothetical sufE-like protein R01000| Length = 140 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 221 PE*PLLSRLSRSKAHGSGRKIWLVKWSTQGFRSSKFTF 334 PE P +SR S +K G ++WLV +T TF Sbjct: 32 PEMPEVSRTSENKVQGCASQVWLVTHATGDAEDPLLTF 69
>LATS2_MOUSE (Q7TSJ6) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) Length = 1042 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = +1 Query: 190 WQNTGINSCGPRMTTFEQAFQKQSTRFRKEDLAGQMEY 303 W + CG R+ T EQ QKQ R L G Y Sbjct: 800 WDDVSNCRCGDRLKTLEQRAQKQHQRCLAHSLVGTPNY 837
>GSK3B_RAT (P18266) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) (Factor A) (FA) Length = 420 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 307 RFPQLQVHLWSELSRPSRPP 366 +FPQ++ H W+++ RP PP Sbjct: 292 KFPQIKAHPWTKVFRPRTPP 311
>GSK3B_MOUSE (Q9WV60) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) Length = 420 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 307 RFPQLQVHLWSELSRPSRPP 366 +FPQ++ H W+++ RP PP Sbjct: 292 KFPQIKAHPWTKVFRPRTPP 311
>GSK3B_HUMAN (P49841) Glycogen synthase kinase-3 beta (EC 2.7.11.26) (GSK-3| beta) Length = 420 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 307 RFPQLQVHLWSELSRPSRPP 366 +FPQ++ H W+++ RP PP Sbjct: 292 KFPQIKAHPWTKVFRPRTPP 311
>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)| (Golgin-like protein) Length = 693 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +1 Query: 187 RWQNTGINSCGPRMTTFEQAFQKQSTRFRKEDLAGQMEYTRFPQLQVHLWSELSR 351 R Q + G R+ EQ +KQ R RKE+ Q + R + LW + R Sbjct: 368 REQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEER 422
>ESTN_MOUSE (P23953) Liver carboxylesterase N precursor (EC 3.1.1.1) (PES-N)| (Lung surfactant convertase) Length = 554 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = -2 Query: 328 ELGAAETLCTPFDQPDLPSGTVCFASGKPAQKWSFW--GRSY*SLCS 194 E A L PF +P P G++ FA +PA+ WSF SY +CS Sbjct: 44 EQPVAVFLGVPFAKP--PLGSLRFAPPQPAEPWSFVKNATSYPPMCS 88
>DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) Length = 1101 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 18 LRNSKWTTNPQLQLSYESITQKSGSIRNKQ 107 LRN +TT ++ + Y S T KSG ++N + Sbjct: 127 LRNKDFTTKREMVVQYISATAKSGGLKNSK 156
>DLX2A_BRARE (P50574) Homeobox protein Dlx2a (DLX-2) (Distal-less homeobox gene| 2a) Length = 270 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +1 Query: 43 IHSCSYHTKALLKNQVV*EINRFARTNGQ*NGNKQICQNKRTMKMAMYRWQNTGINSCGP 222 I S SYH+ L K+Q + T+ N N Q C + + Y++QN +NS Sbjct: 17 ITSSSYHS--LHKSQESPTLPVSTATDSSINNNNQQCAGSPYGQSSSYQYQNNSMNSVQY 74 Query: 223 RMTTFEQAF 249 ++E F Sbjct: 75 NTKSYELGF 83
>CSPG5_HUMAN (O95196) Chondroitin sulfate proteoglycan 5 precursor (Neuroglycan| C) (Acidic leucine-rich EGF-like domain-containing brain protein) Length = 566 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 373 DEEEVEKDVKARTKGELGAAETLCTPFDQPDLPSGTVCFASGKPAQKW 230 +EEE E D A G+L L P +P L GT G+P +W Sbjct: 278 EEEEEEDDKDAVGGGDLEDENELLVPTGKPGLGPGT-----GQPTSRW 320
>YYAE_BACSU (P37519) Hypothetical protein yyaE| Length = 667 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 271 GTVCFASGKPAQKWSFWGRSY 209 G++C+ SG AQ W F GRSY Sbjct: 131 GSICWGSGIEAQSWDF-GRSY 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,257,206 Number of Sequences: 219361 Number of extensions: 1487414 Number of successful extensions: 4307 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4301 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
