ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009475.1| Triticum aestivum clone wr1.pk0032.h7:fis, full i... 422 e-115
2gb|BT016683.1| Zea mays clone Contig516 mRNA sequence 210 3e-51
3gb|AY104927.1| Zea mays PCO113544 mRNA sequence 210 3e-51
4dbj|AK119165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
5dbj|AK104881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
6dbj|AK069541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
9emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa... 86 1e-13
10gb|DQ192536.1| Zea mays clone mmp123 genomic sequence 62 2e-06
11dbj|AB097405.1| Raphanus sativus RsProRS2 mRNA for prolyl-tRNA s... 52 0.002
12gb|BT013426.1| Lycopersicon esculentum clone 132066F, mRNA sequence 50 0.006
13dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.098
14dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.098
15gb|AC098583.2| Homo sapiens BAC clone RP11-10G12 from 4, complet... 44 0.39
16gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co... 44 0.39
17gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, c... 44 0.39
18emb|AL583891.15| Mouse DNA sequence from clone RP23-292L2 on chr... 44 0.39
19gb|AC110513.6| Mus musculus chromosome 3, clone RP24-147L5, comp... 42 1.5
20gb|AC105076.25| Mus musculus chromosome 3, clone RP23-258P2, com... 42 1.5
21gb|AC005537.2| Homo sapiens BAC clone GS1-308H5 from 7, complete... 42 1.5
22dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.5
23gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
24gb|AC117258.2| Mus musculus BAC clone RP24-491P21 from X, comple... 40 6.0
25emb|AJ301617.1|DRE301617 Danio rerio partial mRNA for Frizzled 7... 40 6.0
26emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chr... 40 6.0
27emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in... 40 6.0
28gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosom... 40 6.0
29gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Canc... 40 6.0
30gb|AC008902.5| Homo sapiens chromosome 5 clone CTD-2249G23, comp... 40 6.0
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
32gb|AY954953.1| Bacteriophage 85, complete genome 40 6.0
33gb|AC141636.4| Mus musculus BAC clone RP23-471D17 from chromosom... 40 6.0
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
35gb|AC153541.4| Mus musculus 10 BAC RP23-80P5 (Roswell Park Cance... 40 6.0
36gb|AF252829.4| Homo sapiens chromosome 8 clone RP11-495D4 map 8q... 40 6.0 
>gb|BT009475.1| Triticum aestivum clone wr1.pk0032.h7:fis, full insert mRNA sequence
          Length = 1291

 Score =  422 bits (213), Expect = e-115
 Identities = 286/308 (92%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                        
Query: 137  gaaataaacagatttgccagaacaaacggacaatgaaaatggcaatgtata-ggtggcag 195
            ||||||||||| ||||||||| ||||||  | | ||||||| ||||||||| |||| |||
Sbjct: 1105 gaaataaacagctttgccagagcaaacgatccacgaaaatgccaatgtataaggtgacag 1046

                                                                        
Query: 196  aacacagggatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaag 255
            |||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 1045 aacacag--atcaatagctgcgaccccagaatgaccacttttgagcaggctttccggaag 988

                                                                        
Query: 256  caaagcacacggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccg 315
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 987  caaagcacacggttccggaaggaagatctggctggtcaaatggagtacacaatgttttcg 928

                                                                        
Query: 316  cagctccaagttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcac 375
            |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 927  cagccccaagttcacctttggtccgagctttcacgtccttctccacctcctcttcatcac 868

                                                                        
Query: 376  accatggagccaagatcaactttttgtcattgagagctgctatgaattcatcccaagtgc 435
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 867  accatggagccaagatcaactttttgtcgttgagagccgctatgaattcatcccaggtgc 808

                    
Query: 436  taatgatt 443
            | ||||||
Sbjct: 807  tgatgatt 800



 Score =  147 bits (74), Expect = 4e-32
 Identities = 114/127 (89%), Gaps = 4/127 (3%)
 Strand = Plus / Minus

                                                                        
Query: 2    gatcgacatgcaatcattacgaaatagcaaatggacaaccaatccacagttgcagttatc 61
            |||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||
Sbjct: 1204 gatcaacatgcaatcattacgaaatagcaaatggacaactaatccgcagttacaggtatc 1145

                                                                        
Query: 62   atacgaaagcattactcaaaaatcaggtag----tataagaaataaacagatttgccaga 117
            | | ||||||||||||||||||||||||||    |||||||||||||||| |||||||||
Sbjct: 1144 acaggaaagcattactcaaaaatcaggtagtatatataagaaataaacagctttgccaga 1085

                   
Query: 118  acaaacg 124
             ||||||
Sbjct: 1084 gcaaacg 1078
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>gb|BT016683.1| Zea mays clone Contig516 mRNA sequence
          Length = 1416

 Score =  210 bits (106), Expect = 3e-51
 Identities = 199/230 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  atcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagcaca 264
            |||| ||||||||||||||||| |||||||| |  || ||||||||||| ||||||||||
Sbjct: 1097 atcagtagctgcggccccagaacgaccacttcttcgctggctttccagatgcaaagcaca 1038

                                                                        
Query: 265  cggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccgcagctccaa 324
             ||| ||    ||||| |||||||| ||||||||||||||||| |||| |||||||||||
Sbjct: 1037 gggtaccttctggaagttctggctgctcaaatggagtacacaatgttttcgcagctccaa 978

                                                                        
Query: 325  gttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcacaccatggag 384
            |||| ||||| ||||||| ||| || || ||||| |  ||||||||||||||||||||||
Sbjct: 977  gttccccttttgtccgagtttttacatctttctcaatttcctcctcatcacaccatggag 918

                                                              
Query: 385  ccaagatcaactttttgtcattgagagctgctatgaattcatcccaagtg 434
            |||||||||||||||||| ||| ||||| | | |||||||||||||||||
Sbjct: 917  ccaagatcaactttttgttattcagagcagttgtgaattcatcccaagtg 868
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>gb|AY104927.1| Zea mays PCO113544 mRNA sequence
          Length = 1954

 Score =  210 bits (106), Expect = 3e-51
 Identities = 199/230 (86%)
 Strand = Plus / Minus

                                                                        
Query: 205  atcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagcaca 264
            |||| ||||||||||||||||| |||||||| |  || ||||||||||| ||||||||||
Sbjct: 1754 atcagtagctgcggccccagaacgaccacttcttcgctggctttccagatgcaaagcaca 1695

                                                                        
Query: 265  cggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccgcagctccaa 324
             ||| ||    ||||| |||||||| ||||||||||||||||| |||| |||||||||||
Sbjct: 1694 gggtaccttctggaagttctggctgctcaaatggagtacacaatgttttcgcagctccaa 1635

                                                                        
Query: 325  gttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcacaccatggag 384
            |||| ||||| ||||||| ||| || || ||||| |  ||||||||||||||||||||||
Sbjct: 1634 gttccccttttgtccgagtttttacatctttctcaatttcctcctcatcacaccatggag 1575

                                                              
Query: 385  ccaagatcaactttttgtcattgagagctgctatgaattcatcccaagtg 434
            |||||||||||||||||| ||| ||||| | | |||||||||||||||||
Sbjct: 1574 ccaagatcaactttttgttattcagagcagttgtgaattcatcccaagtg 1525
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>dbj|AK119165.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E06, full
           insert sequence
          Length = 979

 Score =  204 bits (103), Expect = 2e-49
 Identities = 196/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 204 gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagcac 263
           ||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||| 
Sbjct: 745 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagcat 686

                                                                       
Query: 264 acggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccgcagctcca 323
             ||||||    || ||||||||||| |||||||| |||||||| || |  |||||||| 
Sbjct: 685 gtggttccttctgggagatctggctgttcaaatggtgtacacaatgtcttggcagctccc 626

                                                                       
Query: 324 agttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcacaccatgga 383
           || |||||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||
Sbjct: 625 aggtcaccttttgtccgagccttcacatccttctcaacttcctcttcatcacaccatgga 566

                                                          
Query: 384 gccaagatcaactttttgtcattgagagctgctatgaattcatccca 430
           |||| |||||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 565 gccaggatcaattttttgtcattcagagccactatgaattcatccca 519
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>dbj|AK104881.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H01, full
            insert sequence
          Length = 1888

 Score =  204 bits (103), Expect = 2e-49
 Identities = 196/227 (86%)
 Strand = Plus / Minus

                                                                        
Query: 204  gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagcac 263
            ||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||| 
Sbjct: 1654 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagcat 1595

                                                                        
Query: 264  acggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccgcagctcca 323
              ||||||    || ||||||||||| |||||||| |||||||| || |  |||||||| 
Sbjct: 1594 gtggttccttctgggagatctggctgttcaaatggtgtacacaatgtcttggcagctccc 1535

                                                                        
Query: 324  agttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcacaccatgga 383
            || |||||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||
Sbjct: 1534 aggtcaccttttgtccgagccttcacatccttctcaacttcctcttcatcacaccatgga 1475

                                                           
Query: 384  gccaagatcaactttttgtcattgagagctgctatgaattcatccca 430
            |||| |||||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 1474 gccaggatcaattttttgtcattcagagccactatgaattcatccca 1428
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>dbj|AK069541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023E12, full
            insert sequence
          Length = 1995

 Score =  204 bits (103), Expect = 2e-49
 Identities = 196/227 (86%)
 Strand = Plus / Minus

                                                                        
Query: 204  gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagcac 263
            ||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||| 
Sbjct: 1815 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagcat 1756

                                                                        
Query: 264  acggttccggaaggaagatctggctggtcaaatggagtacacaaggtttccgcagctcca 323
              ||||||    || ||||||||||| |||||||| |||||||| || |  |||||||| 
Sbjct: 1755 gtggttccttctgggagatctggctgttcaaatggtgtacacaatgtcttggcagctccc 1696

                                                                        
Query: 324  agttcacctttggtccgagctttcacgtccttctcgacctcctcctcatcacaccatgga 383
            || |||||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||
Sbjct: 1695 aggtcaccttttgtccgagccttcacatccttctcaacttcctcttcatcacaccatgga 1636

                                                           
Query: 384  gccaagatcaactttttgtcattgagagctgctatgaattcatccca 430
            |||| |||||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 1635 gccaggatcaattttttgtcattcagagccactatgaattcatccca 1589
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                            
Query: 364      cctcctcatcacaccatggagccaagatcaactttttgtcattgagagctgctatgaatt 423
                |||| ||||||||||||||||||| |||||| ||||||||||| |||||  |||||||||
Sbjct: 14942497 cctcttcatcacaccatggagccaggatcaattttttgtcattcagagccactatgaatt 14942556

                       
Query: 424      catccca 430
                |||||||
Sbjct: 14942557 catccca 14942563



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 204      gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagca 262
                ||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||
Sbjct: 14941698 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagca 14941756



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                            
Query: 279      agatctggctggtcaaatggagtacacaaggtttccgcagctccaagttcacctttggtc 338
                ||||||||||| |||||||| |||||||| || |  |||||||| || |||||||| |||
Sbjct: 14941917 agatctggctgttcaaatggtgtacacaatgtcttggcagctcccaggtcaccttttgtc 14941976

                                    
Query: 339      cgagctttcacgtccttctc 358
                ||||| ||||| ||||||||
Sbjct: 14941977 cgagccttcacatccttctc 14941996
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                            
Query: 364      cctcctcatcacaccatggagccaagatcaactttttgtcattgagagctgctatgaatt 423
                |||| ||||||||||||||||||| |||||| ||||||||||| |||||  |||||||||
Sbjct: 14896780 cctcttcatcacaccatggagccaggatcaattttttgtcattcagagccactatgaatt 14896839

                       
Query: 424      catccca 430
                |||||||
Sbjct: 14896840 catccca 14896846



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 204      gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagca 262
                ||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||
Sbjct: 14895981 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagca 14896039



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                            
Query: 279      agatctggctggtcaaatggagtacacaaggtttccgcagctccaagttcacctttggtc 338
                ||||||||||| |||||||| |||||||| || |  |||||||| || |||||||| |||
Sbjct: 14896200 agatctggctgttcaaatggtgtacacaatgtcttggcagctcccaggtcaccttttgtc 14896259

                                    
Query: 339      cgagctttcacgtccttctc 358
                ||||| ||||| ||||||||
Sbjct: 14896260 cgagccttcacatccttctc 14896279
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>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 174521

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                         
Query: 204    gatcaatagctgcggccccagaatgaccacttttgagcaggctttccagaagcaaagca 262
              ||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||
Sbjct: 140149 gatcaatagctgcggccccagaatgaccatttcttcgcaggctttccagaagcaaagca 140091



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                          
Query: 364    cctcctcatcacaccatggagccaagatcaactttttgtcattgagagctgctatgaatt 423
              |||| ||||||||||||||||||| |||||| ||||||||||| |||||  |||||||||
Sbjct: 139350 cctcttcatcacaccatggagccaggatcaattttttgtcattcagagccactatgaatt 139291

                     
Query: 424    catccca 430
              |||||||
Sbjct: 139290 catccca 139284



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                          
Query: 279    agatctggctggtcaaatggagtacacaaggtttccgcagctccaagttcacctttggtc 338
              ||||||||||| |||||||| |||||||| || |  |||||||| || |||||||| |||
Sbjct: 139930 agatctggctgttcaaatggtgtacacaatgtcttggcagctcccaggtcaccttttgtc 139871

                                  
Query: 339    cgagctttcacgtccttctc 358
              ||||| ||||| ||||||||
Sbjct: 139870 cgagccttcacatccttctc 139851
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>gb|DQ192536.1| Zea mays clone mmp123 genomic sequence
          Length = 250

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 364 cctcctcatcacaccatggagccaagatcaactttttgt 402
           |||||||||| |||||||||||||||| |||||||||||
Sbjct: 199 cctcctcatcgcaccatggagccaagaccaactttttgt 237
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>dbj|AB097405.1| Raphanus sativus RsProRS2 mRNA for prolyl-tRNA synthetase, partial
           cds
          Length = 662

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 282 tctggctggtcaaatggagtacacaaggtttccgcagctccaagttcacctttggtccga 341
           |||||||| |||||||||| ||| | ||||| ||| ||||||  ||||||||| || || 
Sbjct: 622 tctggctgctcaaatggagaacagagggttttcgctgctccagtttcacctttagtacgt 563

                                                             
Query: 342 gctttcacgtccttctcgacctcctcctcatcacaccatggagccaagat 391
           || || || ||  |||| || ||||||||||| ||||| ||||| |||||
Sbjct: 562 gccttgacatctctctccacttcctcctcatcgcaccagggagctaagat 513
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>gb|BT013426.1| Lycopersicon esculentum clone 132066F, mRNA sequence
          Length = 1899

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 354  ttctcgacctcctcctcatcacaccatggagccaagatcaa 394
            ||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 1577 ttctcaacatcctcctcatcacaccaaggagccaatatcaa 1537
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 360   acctcctcctcatcacaccatggagccaagatcaacttt 398
             |||||||||||||||||||| || || ||||||| ||||
Sbjct: 63334 acctcctcctcatcacaccaaggtgctaagatcatcttt 63296
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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
              complete sequence
          Length = 133589

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 360    acctcctcctcatcacaccatggagccaagatcaacttt 398
              |||||||||||||||||||| || || ||||||| ||||
Sbjct: 121675 acctcctcctcatcacaccaaggtgctaagatcatcttt 121713
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>gb|AC098583.2| Homo sapiens BAC clone RP11-10G12 from 4, complete sequence
          Length = 127148

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 128   aatgaaatggaaataaacagatttgccaga 157
             ||||||||| ||||| ||||||||||||||
Sbjct: 98301 aatgaaatgaaaatatacagatttgccaga 98330
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>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 126    tcaatgaaatggaaataaacag 147
              ||||||||||||||||||||||
Sbjct: 163071 tcaatgaaatggaaataaacag 163050
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>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence
          Length = 174914

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 126    tcaatgaaatggaaataaacag 147
              ||||||||||||||||||||||
Sbjct: 140606 tcaatgaaatggaaataaacag 140627
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>emb|AL583891.15| Mouse DNA sequence from clone RP23-292L2 on chromosome 15, complete
              sequence
          Length = 170132

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 239    agcaggctttccagaagcaaag 260
              ||||||||||||||||||||||
Sbjct: 161566 agcaggctttccagaagcaaag 161587
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>gb|AC110513.6| Mus musculus chromosome 3, clone RP24-147L5, complete sequence
          Length = 154446

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     agcaaatggacaaccaatcca 47
              |||||||||||||||||||||
Sbjct: 134665 agcaaatggacaaccaatcca 134685
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>gb|AC105076.25| Mus musculus chromosome 3, clone RP23-258P2, complete sequence
          Length = 193458

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 27   agcaaatggacaaccaatcca 47
            |||||||||||||||||||||
Sbjct: 8409 agcaaatggacaaccaatcca 8429
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>gb|AC005537.2| Homo sapiens BAC clone GS1-308H5 from 7, complete sequence
          Length = 176750

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    aatgaaatggaaataaacaga 148
              |||||||||||||||||||||
Sbjct: 135695 aatgaaatggaaataaacaga 135675
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>dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144,
             complete sequence
          Length = 89959

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 218   gccccagaatgaccacttttgagcaggctttccagaagcaaagca 262
             ||||||| |||||||||||   ||||||||||| || ||||||||
Sbjct: 19162 gccccagtatgaccactttgtcgcaggctttcctgatgcaaagca 19118
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>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11,
              complete sequence
          Length = 199348

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    acctcctcctcatcacacca 379
              ||||||||||||||||||||
Sbjct: 168547 acctcctcctcatcacacca 168528
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>gb|AC117258.2| Mus musculus BAC clone RP24-491P21 from X, complete sequence
          Length = 161458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 96    agaaataaaca-gatttgccagaacaaa 122
             ||||||||||| ||||||||||||||||
Sbjct: 33841 agaaataaacatgatttgccagaacaaa 33868
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>emb|AJ301617.1|DRE301617 Danio rerio partial mRNA for Frizzled 7 protein (fz7 gene)
          Length = 1680

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  gagcaggctttccagaagca 257
            ||||||||||||||||||||
Sbjct: 1429 gagcaggctttccagaagca 1448
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>emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chromosome 4 Contains part
             of the Ptprd gene for receptor type protein tyrosine
             phosphatase D, complete sequence
          Length = 186256

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   gtcaatgaaatggaaataaa 144
             ||||||||||||||||||||
Sbjct: 64531 gtcaatgaaatggaaataaa 64550
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>emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in linkage group 13,
              complete sequence
          Length = 143940

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     taagaaataaacagatttgc 113
              ||||||||||||||||||||
Sbjct: 125469 taagaaataaacagatttgc 125488
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>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete
             sequence
          Length = 161075

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   ttttgagcaggctttccaga 253
             ||||||||||||||||||||
Sbjct: 53181 ttttgagcaggctttccaga 53200
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>gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156054

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    tataagaaataaacagattt 111
             ||||||||||||||||||||
Sbjct: 84489 tataagaaataaacagattt 84470
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>gb|AC008902.5| Homo sapiens chromosome 5 clone CTD-2249G23, complete sequence
          Length = 101352

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 128   aatgaaatggaaataaacagattt 151
             ||||||||||||||||||| ||||
Sbjct: 38454 aatgaaatggaaataaacacattt 38431
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 360      acctcctcctcatcacacca 379
                ||||||||||||||||||||
Sbjct: 25039499 acctcctcctcatcacacca 25039480
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>gb|AY954953.1| Bacteriophage 85, complete genome
          Length = 44283

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   catcccaagtgctaatgatt 443
             ||||||||||||||||||||
Sbjct: 24891 catcccaagtgctaatgatt 24910
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>gb|AC141636.4| Mus musculus BAC clone RP23-471D17 from chromosome 19, complete
             sequence
          Length = 165424

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ggctttccagaagcaaagca 262
             ||||||||||||||||||||
Sbjct: 99168 ggctttccagaagcaaagca 99187
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 360      acctcctcctcatcacacca 379
                ||||||||||||||||||||
Sbjct: 25351089 acctcctcctcatcacacca 25351070
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>gb|AC153541.4| Mus musculus 10 BAC RP23-80P5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222655

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    tcaaatggagtacacaaggtttcc 314
              ||||||||| ||||||||||||||
Sbjct: 171821 tcaaatggaatacacaaggtttcc 171844
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>gb|AF252829.4| Homo sapiens chromosome 8 clone RP11-495D4 map 8q24.2, complete sequence
          Length = 199668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    acctcctcctcatcacacca 379
              ||||||||||||||||||||
Sbjct: 131419 acctcctcctcatcacacca 131400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,752,598
Number of Sequences: 3902068
Number of extensions: 4752598
Number of successful extensions: 87207
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 87040
Number of HSP's gapped (non-prelim): 167
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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