ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RA51B_MOUSE (O35719) DNA repair protein RAD51 homolog 2 (R51H2) ... 30 3.1
2ACSA_BRAJA (Q89WV5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (A... 29 6.8

>RA51B_MOUSE (O35719) DNA repair protein RAD51 homolog 2 (R51H2) (RAD51-like|
           protein 1)
          Length = 350

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 375 STLVCALRQVDISLHAGVPDRSSSQYLGDPHCVPQHFSLL 256
           ST +CAL   D +LH GVP  S ++  G P C    F ++
Sbjct: 84  STTLCAL---DEALHGGVPCGSLTEITGPPGCGKTQFCIM 120



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>ACSA_BRAJA (Q89WV5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 648

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 55  PSYHSNPKFFDITQTVHSSHIFFTNGSPLRLTFRGGPVELKATNAMNLK 201
           P+Y  N +F+++    H  + F+T  + +R   +GG   +K T+  +L+
Sbjct: 331 PNYPDNSRFWNVIDK-HKVNTFYTAPTAIRALMQGGDEPVKKTSRASLR 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,874,265
Number of Sequences: 219361
Number of extensions: 1218112
Number of successful extensions: 2659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2656
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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