ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.22
2gb|AC087893.15| Homo sapiens 12 BAC RP11-423G4 (Roswell Park Can... 42 0.88
3gb|DQ289010.1| Trichoderma caribbaeum strain Dis 320c translatio... 40 3.5

>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 208   tccacatcatgtcacaaaaaca 229
             ||||||||||||||||||||||
Sbjct: 78692 tccacatcatgtcacaaaaaca 78671



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>gb|AC087893.15| Homo sapiens 12 BAC RP11-423G4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 207829

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    cctttgacatgtccacatcat 217
              |||||||||||||||||||||
Sbjct: 104352 cctttgacatgtccacatcat 104332



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>gb|DQ289010.1| Trichoderma caribbaeum strain Dis 320c translation elongation
           factor 1 alpha (tef1) gene, partial sequence
          Length = 509

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ctttgacatgtccacatcat 217
           ||||||||||||||||||||
Sbjct: 443 ctttgacatgtccacatcat 462


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,813,849
Number of Sequences: 3902068
Number of extensions: 1813849
Number of successful extensions: 30215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30212
Number of HSP's gapped (non-prelim): 3
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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