ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACA13_ARATH (Q9LIK7) Putative calcium-transporting ATPase 13, pl... 28 5.2
2Y06M_BPT4 (P32273) Hypothetical 12.2 kDa protein in e-segB inter... 28 6.8

>ACA13_ARATH (Q9LIK7) Putative calcium-transporting ATPase 13, plasma|
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13)
          Length = 1017

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 30  IILSTSKFVNSTNKRWKLFTARGYTTPTLYN-----LQTKSAFPSSMEIVAL 170
           ++L   K ++ +NK+W+L   + Y + TL N     ++    FP S+   A+
Sbjct: 19  VLLELPKTLSKSNKKWQLALIKLYCSRTLLNCAKHAIRKPGLFPRSLSYTAI 70



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>Y06M_BPT4 (P32273) Hypothetical 12.2 kDa protein in e-segB intergenic region|
          Length = 102

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 129 FVDCRVWVWYILEL*ITSTFCLYYSQILKWT 37
           F D +V +WYI+ L I S+F  Y+   ++WT
Sbjct: 72  FTDKKVLLWYIISLPI-SSFVFYFFIKIQWT 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,963,790
Number of Sequences: 219361
Number of extensions: 445558
Number of successful extensions: 1062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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