>LRRN3_RAT (Q9ESY6) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 707

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 20  FNITHYIRTTSDYVCLDVPSIYTFSDDYRRNQKRKAVDH 136
           +N+TH   +T   +C+D+P+IY  S     N   K+++H
Sbjct: 578 YNLTHLKPSTEYKICIDIPTIYQKSRKQCVNVTTKSLEH 616

>LRRN3_MOUSE (Q8CBC6) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 707

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 20  FNITHYIRTTSDYVCLDVPSIYTFSDDYRRNQKRKAVDH 136
           +N+TH   +T   +C+D+P++Y  S     N   K+++H
Sbjct: 578 YNLTHLKPSTEYKICIDIPTVYQKSRKQCVNVTTKSLEH 616

>AMDR_ASPOR (Q06157) Acetamidase regulatory protein|
          Length = 775

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 250 HCRVSELPCSVRVVGKHCCTPHSRKGNKLDRRISRRKLMVNCLSFLVPAVV 98
           HC   ++ C  R+VG  C   + R   K D RI  +K  +   S L P  +
Sbjct: 28  HCHRRKVRCDARIVGLPC--SNCRSAGKADCRIHEKKKRLAVRSILDPVPI 76

>AMDR_ASPFU (Q4WK35) Acetamidase regulatory protein|
          Length = 772

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 250 HCRVSELPCSVRVVGKHCCTPHSRKGNKLDRRISRRKLMVNCLSFLVPAVV 98
           HC   ++ C  R+VG  C   + R   K D RI  +K  +   S L P  +
Sbjct: 29  HCHRRKVRCDARIVGLPC--SNCRSSGKTDCRIHEKKKRLAVRSILNPVPI 77

>YDIB_ECO57 (Q8X5Y4) Quinate/shikimate dehydrogenase (EC 1.1.1.282)|
           (NAD-dependent shikimate 5-dehydrogenase 2)
          Length = 288

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 175 GNKLDRRISRRKLMVNCLSFLVPAVVVAECIY 80
           G K+  +    K +VN +S L P ++V EC+Y
Sbjct: 203 GTKVGMKPLENKSLVNDISLLHPGLLVTECVY 234

>EPB42_BOVIN (O46510) Erythrocyte membrane protein band 4.2 (Erythrocyte protein|
           4.2) (P4.2)
          Length = 686

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 224 TGQLTHSTMPPLTRSCLTDNHPHVFISMPVVTPEPQPNVVVV 349
           T   THS++P   +  +    PH+ I MP    + Q  + +V
Sbjct: 562 TAMATHSSLPCFAQQDIAIRRPHLAIEMPETAEQHQTLIALV 603

>LRRN3_PONPY (Q5R482) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 708

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 20  FNITHYIRTTSDYVCLDVPSIY 85
           +N+TH   +T   +C+D+P+IY
Sbjct: 578 YNLTHLNPSTEYKICIDIPTIY 599

>LRRN3_HUMAN (Q9H3W5) Leucine-rich repeats neuronal protein 3 precursor|
           (Neuronal leucine-rich repeat protein 3) (NLRR-3)
          Length = 708

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 20  FNITHYIRTTSDYVCLDVPSIY 85
           +N+TH   +T   +C+D+P+IY
Sbjct: 578 YNLTHLNPSTEYKICIDIPTIY 599

>T2B1_BACST (P70985) Type II restriction enzyme BsoBI (EC 3.1.21.4)|
           (Endonuclease BsoBI) (R.BsoBI)
          Length = 323

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 34  LHQNNIRLCLLRCTINIYIQRRLPQEPKK 120
           L + N+ +CL  C   IY  +++ Q+P+K
Sbjct: 206 LVKKNVDICLFNCEPEIYTPQKVHQQPEK 234

>YDIB_ECOLI (P0A6D5) Quinate/shikimate dehydrogenase (EC 1.1.1.282)|
           (NAD-dependent shikimate 5-dehydrogenase 2)
          Length = 288

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 175 GNKLDRRISRRKLMVNCLSFLVPAVVVAECIY 80
           G K+  +    + +VN +S L P ++V EC+Y
Sbjct: 203 GTKVGMKPLENESLVNDISLLHPGLLVTECVY 234

>YDIB_ECOL6 (P0A6D6) Quinate/shikimate dehydrogenase (EC 1.1.1.282)|
           (NAD-dependent shikimate 5-dehydrogenase 2)
          Length = 288

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 175 GNKLDRRISRRKLMVNCLSFLVPAVVVAECIY 80
           G K+  +    + +VN +S L P ++V EC+Y
Sbjct: 203 GTKVGMKPLENESLVNDISLLHPGLLVTECVY 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,030,913
Number of Sequences: 219361
Number of extensions: 860574
Number of successful extensions: 2322
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2321
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)