>dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequence
          Length = 217182

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 311    gttgttacccctgaacctcagc 332
              ||||||||||||||||||||||
Sbjct: 163782 gttgttacccctgaacctcagc 163803

>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   gcaggaaccaaaaaagaaagg 125
             |||||||||||||||||||||
Sbjct: 86534 gcaggaaccaaaaaagaaagg 86554

>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence
          Length = 199782

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    gcaggaaccaaaaaagaaagg 125
              |||||||||||||||||||||
Sbjct: 147113 gcaggaaccaaaaaagaaagg 147133

>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  gcaggaaccaaaaaagaaagg 125
            |||||||||||||||||||||
Sbjct: 8175 gcaggaaccaaaaaagaaagg 8195

>ref|XM_638349.1| Dictyostelium discoideum adhesion modulation protein A
           (DDB0185088), partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  tacacattacatcagaacaa 47
           ||||||||||||||||||||
Sbjct: 676 tacacattacatcagaacaa 657

>ref|NM_192504.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 cttcatcagcatgccggttg 314
           ||||||||||||||||||||
Sbjct: 739 cttcatcagcatgccggttg 720

>gb|AY368388.1| Thelymitra sp. Chase O-489 maturase K-like (matK) gene, partial
           sequence; chloroplast gene for chloroplast product
          Length = 1799

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 295      cttcatcagcatgccggttg 314
                ||||||||||||||||||||
Sbjct: 27082533 cttcatcagcatgccggttg 27082552



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 170      attcccctttctactatgtg 189
                ||||||||||||||||||||
Sbjct: 14581440 attcccctttctactatgtg 14581421

>gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complement(1004496-821614)
             strain AX4, complete sequence
          Length = 182870

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tacacattacatcagaacaa 47
             ||||||||||||||||||||
Sbjct: 84377 tacacattacatcagaacaa 84396

>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0671D01
          Length = 163006

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    cttcatcagcatgccggttg 314
              ||||||||||||||||||||
Sbjct: 141364 cttcatcagcatgccggttg 141383

>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1164G11
          Length = 142699

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   attcccctttctactatgtg 189
             ||||||||||||||||||||
Sbjct: 62817 attcccctttctactatgtg 62798

>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0514H03
          Length = 167230

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    attcccctttctactatgtg 189
              ||||||||||||||||||||
Sbjct: 140753 attcccctttctactatgtg 140734

>dbj|AK072645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131B07, full
           insert sequence
          Length = 1576

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 cttcatcagcatgccggttg 314
           ||||||||||||||||||||
Sbjct: 509 cttcatcagcatgccggttg 490

>dbj|AK072283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016B15, full
           insert sequence
          Length = 1862

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 cttcatcagcatgccggttg 314
           ||||||||||||||||||||
Sbjct: 855 cttcatcagcatgccggttg 836

>emb|AJ310077.1|TIX310077 Thelymitra ixioides chloroplast matK pseudogene
          Length = 1196

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26

>emb|AJ310076.1|TCA310076 Thelymitra carnea chloroplast matK pseudogene
          Length = 1797

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26

>emb|AJ310002.1|CCA310002 Calochilus campestris chloroplast matK pseudogene
          Length = 1795

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,200,615
Number of Sequences: 3902068
Number of extensions: 3200615
Number of successful extensions: 77902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77847
Number of HSP's gapped (non-prelim): 55
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)