ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATK3_ARATH (P46875) Kinesin-3 (Kinesin-like protein C) 47 2e-05
2ATK1_ARATH (Q07970) Kinesin-1 (Kinesin-like protein A) 47 2e-05
3ATK2_ARATH (P46864) Kinesin-2 (Kinesin-like protein B) 38 0.008
4KLP2_SCHPO (Q9US03) Kinesin-like protein 2 30 2.2
5KIFC2_MOUSE (O08672) Kinesin-like protein KIFC2 28 6.4
6KIFC3_MOUSE (O35231) Kinesin-like protein KIFC3 28 8.3
7REB1_YEAST (P21538) DNA-binding protein REB1 (QBP) 28 8.3
8SYE_METMP (Q6LYI0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 8.3

>ATK3_ARATH (P46875) Kinesin-3 (Kinesin-like protein C)|
          Length = 754

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -3

Query: 413 CSLRFAARVNSCEIGVPRRQTQMRSL 336
           CSLRFAARVN+CEIG PRRQT ++ L
Sbjct: 722 CSLRFAARVNACEIGTPRRQTNIKPL 747



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>ATK1_ARATH (Q07970) Kinesin-1 (Kinesin-like protein A)|
          Length = 793

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -3

Query: 413 CSLRFAARVNSCEIGVPRRQTQMRSL 336
           CSLRFAARVN+CEIG+PRRQT  + L
Sbjct: 761 CSLRFAARVNACEIGIPRRQTSTKLL 786



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>ATK2_ARATH (P46864) Kinesin-2 (Kinesin-like protein B)|
          Length = 745

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = -3

Query: 413 CSLRFAARVNSCEIGVPRRQTQMRSL 336
           CSLRFAARVN+CEIG   R    R L
Sbjct: 713 CSLRFAARVNACEIGTAHRHVNARPL 738



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>KLP2_SCHPO (Q9US03) Kinesin-like protein 2|
          Length = 817

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 413 CSLRFAARVNSCEIGVPRRQTQ 348
           CSLRFA +VN+ +IG  R+ T+
Sbjct: 796 CSLRFATKVNNTQIGTARKVTK 817



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>KIFC2_MOUSE (O08672) Kinesin-like protein KIFC2|
          Length = 792

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 413 CSLRFAARVNSCEIGVPRRQTQMRS 339
           CSL+FA RV   E+G  RR+   RS
Sbjct: 721 CSLKFAERVGQVELGPARRRRAPRS 745



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>KIFC3_MOUSE (O35231) Kinesin-like protein KIFC3|
          Length = 687

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 410 SLRFAARVNSCEIGVPRRQTQMRSLS 333
           SLRFA RV S E+G   R+T++ S S
Sbjct: 619 SLRFAERVRSVELGPGSRRTELGSWS 644



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>REB1_YEAST (P21538) DNA-binding protein REB1 (QBP)|
          Length = 810

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 176 NNKANENIQPLNAVQMMDCIPQLSTNKQHTYITD 277
           NN  +ENI  LNA +    +   ++N+QH  + D
Sbjct: 72  NNDDSENISALNANESSSNVDHANSNEQHNAVMD 105



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>SYE_METMP (Q6LYI0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 555

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 236 PQLSTNKQHTYITDGPWMGWD 298
           P LST+K H  I  G + GWD
Sbjct: 325 PVLSTSKMHAGILSGEYSGWD 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,049,196
Number of Sequences: 219361
Number of extensions: 922959
Number of successful extensions: 1907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1907
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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