ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470522.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
2ref|XM_476375.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
4gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom... 68 2e-08
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
7dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
8dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
9dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
10dbj|AK063949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
11gb|AC159448.1| Trypanosoma brucei chromosome 8 clone RPCI93-4A8,... 42 1.4
12gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 42 1.4
13gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 42 1.4
14gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome... 42 1.4
15gb|AC134440.3| Mus musculus BAC clone RP24-528L1 from chromosome... 42 1.4
16gb|AC112950.9| Mus musculus chromosome 1, clone RP23-288K15, com... 42 1.4
17gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Canc... 42 1.4
18gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, com... 42 1.4
19emb|AL627144.7| Human DNA sequence from clone RP11-148E14 on chr... 42 1.4
20emb|BX883049.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.4
21emb|BX883050.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.4
22dbj|AK129650.1| Homo sapiens cDNA FLJ26139 fis, clone TMS04711 42 1.4
23gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome... 42 1.4
24gb|BC061492.1| Mus musculus PHD finger protein 20-like 1, mRNA (... 40 5.6
25gb|BC052212.1| Mus musculus PHD finger protein 20-like 1, mRNA (... 40 5.6
26gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91... 40 5.6
27gb|AC163443.6| Mus musculus chromosome 15, clone RP23-284G17, co... 40 5.6
28ref|XM_989902.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
29ref|XM_989935.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
30ref|XM_990128.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
31ref|XM_989873.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
32ref|XM_989972.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
33ref|XM_990155.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
34ref|XM_990100.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
35ref|XM_920156.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
36ref|XM_906939.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
37ref|XM_920151.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
38ref|XM_920185.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
39ref|XM_978298.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
40ref|XM_920215.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
41ref|XM_897838.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
42ref|XM_484476.4| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
43ref|XM_981262.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
44ref|XM_897871.2| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
45ref|XM_981331.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
46ref|XM_981294.1| PREDICTED: Mus musculus PHD finger protein 20-l... 40 5.6
47emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in... 40 5.6
48ref|XM_662251.1| Cryptosporidium hominis TU502 transmembrane pro... 40 5.6
49gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 5.6
50gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, co... 40 5.6
51ref|XM_627941.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 5.6
52dbj|AK032638.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.6
53dbj|AK047341.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.6
54dbj|AK040888.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 5.6
55gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, comple... 40 5.6
56dbj|AK206721.1| Mus musculus cDNA, clone:Y2G0105L15, strand:minu... 40 5.6
57gb|BC082777.1| Mus musculus PHD finger protein 20-like 1, mRNA (... 40 5.6
58dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 5.6
59dbj|AP003461.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.6
60dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 5.6
61emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chr... 40 5.6 
>ref|XM_470522.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2277

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 322  actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
            ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 1931 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 1872

                                              
Query: 382  gagttcacccgagcagcaaaacgaagcgagcaaa 415
            ||||||||||| || || || || ||||||||||
Sbjct: 1871 gagttcacccgtgctgcgaaccgtagcgagcaaa 1838
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>ref|XM_476375.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1619

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 322  actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
            ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 1275 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 1216

                                              
Query: 382  gagttcacccgagcagcaaaacgaagcgagcaaa 415
            ||||||||||| || || || || ||||||||||
Sbjct: 1215 gagttcacccgtgctgcgaaccgtagcgagcaaa 1182
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                            
Query: 322      actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
                ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 36099194 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 36099253

                                                  
Query: 382      gagttcacccgagcagcaaaacgaagcgagcaaa 415
                ||||||||||| || || || || ||||||||||
Sbjct: 36099254 gagttcacccgtgctgcgaaccgtagcgagcaaa 36099287
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>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                          
Query: 322    actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
              ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 160705 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 160764

                                                
Query: 382    gagttcacccgagcagcaaaacgaagcgagcaaa 415
              ||||||||||| || || || || ||||||||||
Sbjct: 160765 gagttcacccgtgctgcgaaccgtagcgagcaaa 160798
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                          
Query: 322    actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
              ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 306382 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 306441

                                                
Query: 382    gagttcacccgagcagcaaaacgaagcgagcaaa 415
              ||||||||||| || || || || ||||||||||
Sbjct: 306442 gagttcacccgtgctgcgaaccgtagcgagcaaa 306475
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                            
Query: 322      actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
                ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 36189268 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 36189327

                                                  
Query: 382      gagttcacccgagcagcaaaacgaagcgagcaaa 415
                ||||||||||| || || || || ||||||||||
Sbjct: 36189328 gagttcacccgtgctgcgaaccgtagcgagcaaa 36189361
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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0446F04
          Length = 175390

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                          
Query: 322    actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
              ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 141246 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 141305

                                                
Query: 382    gagttcacccgagcagcaaaacgaagcgagcaaa 415
              ||||||||||| || || || || ||||||||||
Sbjct: 141306 gagttcacccgtgctgcgaaccgtagcgagcaaa 141339
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>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1317D11
          Length = 135043

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                         
Query: 322   actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
             ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 30620 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 30679

                                               
Query: 382   gagttcacccgagcagcaaaacgaagcgagcaaa 415
             ||||||||||| || || || || ||||||||||
Sbjct: 30680 gagttcacccgtgctgcgaaccgtagcgagcaaa 30713
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>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0617C02
          Length = 135605

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                         
Query: 322   actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
             ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 58381 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 58440

                                               
Query: 382   gagttcacccgagcagcaaaacgaagcgagcaaa 415
             ||||||||||| || || || || ||||||||||
Sbjct: 58441 gagttcacccgtgctgcgaaccgtagcgagcaaa 58474
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>dbj|AK063949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F03, full
            insert sequence
          Length = 1619

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 322  actcatccttgtgacaagctgcgcatttgagtctgacgacgagggacgccgatctcacaa 381
            ||||||||||| | |||||| |||| ||| || ||||||||||||| ||| ||||| || 
Sbjct: 1275 actcatccttgcgccaagctacgcacttgggtttgacgacgagggatgccaatctcgcac 1216

                                              
Query: 382  gagttcacccgagcagcaaaacgaagcgagcaaa 415
            ||||||||||| || || || || ||||||||||
Sbjct: 1215 gagttcacccgtgctgcgaaccgtagcgagcaaa 1182
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>gb|AC159448.1| Trypanosoma brucei chromosome 8 clone RPCI93-4A8, complete sequence
          Length = 152185

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   catttgagtctgacgacgagg 365
             |||||||||||||||||||||
Sbjct: 10255 catttgagtctgacgacgagg 10235
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>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence
          Length = 148464

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    catttgagtctgacgacgagg 365
              |||||||||||||||||||||
Sbjct: 131590 catttgagtctgacgacgagg 131570
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 345     catttgagtctgacgacgagg 365
               |||||||||||||||||||||
Sbjct: 1341813 catttgagtctgacgacgagg 1341793
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>gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome 7, complete sequence
          Length = 165049

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 165   cagcaagaacaaacaacaaagcaaa 189
             ||||| |||||||||||||||||||
Sbjct: 41284 cagcacgaacaaacaacaaagcaaa 41260
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>gb|AC134440.3| Mus musculus BAC clone RP24-528L1 from chromosome 18, complete
           sequence
          Length = 152907

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 247 aacaaacaaacaacacacgta 267
           |||||||||||||||||||||
Sbjct: 636 aacaaacaaacaacacacgta 656
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>gb|AC112950.9| Mus musculus chromosome 1, clone RP23-288K15, complete sequence
          Length = 179084

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   atcaacaaacaaacaacacac 264
             |||||||||||||||||||||
Sbjct: 83580 atcaacaaacaaacaacacac 83560
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>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109988

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   agcaaatgagaatatacaacc 204
             |||||||||||||||||||||
Sbjct: 63870 agcaaatgagaatatacaacc 63890
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>gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, complete sequence
          Length = 198636

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   aacaaacaaacaacacacgta 267
             |||||||||||||||||||||
Sbjct: 14705 aacaaacaaacaacacacgta 14685
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>emb|AL627144.7| Human DNA sequence from clone RP11-148E14 on chromosome 10 Contains
             part of the BTRC gene for beta-transducin repeat
             containing, complete sequence
          Length = 36454

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   attatcaacaaacaaacaaca 261
             |||||||||||||||||||||
Sbjct: 31685 attatcaacaaacaaacaaca 31665
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>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 8/11
          Length = 349476

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    aaacaacaaagcaaatgagaa 195
              |||||||||||||||||||||
Sbjct: 112933 aaacaacaaagcaaatgagaa 112953
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>emb|BX883050.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 9/11
          Length = 348879

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    aaacaacaaagcaaatgagaa 195
              |||||||||||||||||||||
Sbjct: 243433 aaacaacaaagcaaatgagaa 243453
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>dbj|AK129650.1| Homo sapiens cDNA FLJ26139 fis, clone TMS04711
          Length = 1592

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 241  attatcaacaaacaaacaaca 261
            |||||||||||||||||||||
Sbjct: 1479 attatcaacaaacaaacaaca 1499
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>gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome 7, complete sequence
          Length = 247415

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 165    cagcaagaacaaacaacaaagcaaa 189
              ||||| |||||||||||||||||||
Sbjct: 225560 cagcacgaacaaacaacaaagcaaa 225536
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>gb|BC061492.1| Mus musculus PHD finger protein 20-like 1, mRNA (cDNA clone
            IMAGE:3499149), partial cds
          Length = 1854

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1294 cagagttaatacaagccaag 1313
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>gb|BC052212.1| Mus musculus PHD finger protein 20-like 1, mRNA (cDNA clone
            IMAGE:4019308), complete cds
          Length = 4204

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1354 cagagttaatacaagccaag 1373
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>gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91 mating type a locus,
              complete sequence
          Length = 153973

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    aagaacaaacaacaaagcaa 188
              ||||||||||||||||||||
Sbjct: 102900 aagaacaaacaacaaagcaa 102919



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aagaacaaacaacaaagcaa 188
             ||||||||||||||||||||
Sbjct: 27631 aagaacaaacaacaaagcaa 27612



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   aagaacaaacaacaaagcaa 188
             ||||||||||||||||||||
Sbjct: 22479 aagaacaaacaacaaagcaa 22498
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>gb|AC163443.6| Mus musculus chromosome 15, clone RP23-284G17, complete sequence
          Length = 213017

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cagagttaatacaagccaag 33
             ||||||||||||||||||||
Sbjct: 73197 cagagttaatacaagccaag 73178
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>ref|XM_989902.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 5 (Phf20l1), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_989935.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 6 (Phf20l1), mRNA
          Length = 3213

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1442 cagagttaatacaagccaag 1461
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>ref|XM_990128.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 12 (Phf20l1), mRNA
          Length = 7732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_989873.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 4 (Phf20l1), mRNA
          Length = 2318

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_989972.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 7 (Phf20l1), mRNA
          Length = 4273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_990155.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 13 (Phf20l1), mRNA
          Length = 6593

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_990100.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 11 (Phf20l1), mRNA
          Length = 6671

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1428 cagagttaatacaagccaag 1447
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>ref|XM_920156.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 20 (Phf20l1), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_906939.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 16 (Phf20l1), mRNA
          Length = 3213

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1442 cagagttaatacaagccaag 1461
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>ref|XM_920151.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 19 (Phf20l1), mRNA
          Length = 7731

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_920185.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 24 (Phf20l1), mRNA
          Length = 4273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_978298.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 29 (Phf20l1), mRNA
          Length = 6592

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_920215.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 27 (Phf20l1), mRNA
          Length = 6670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1428 cagagttaatacaagccaag 1447
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>ref|XM_897838.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 6 (Phf20l1), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_484476.4| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 1 (Phf20l1), mRNA
          Length = 3213

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1442 cagagttaatacaagccaag 1461
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>ref|XM_981262.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
           variant 12 (Phf20l1), mRNA
          Length = 7731

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 540 cagagttaatacaagccaag 559
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>ref|XM_897871.2| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 10 (Phf20l1), mRNA
          Length = 4273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_981331.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 14 (Phf20l1), mRNA
          Length = 6592

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1350 cagagttaatacaagccaag 1369
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>ref|XM_981294.1| PREDICTED: Mus musculus PHD finger protein 20-like 1, transcript
            variant 13 (Phf20l1), mRNA
          Length = 6670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1428 cagagttaatacaagccaag 1447
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>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9,
             complete sequence
          Length = 103882

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   aacaaacaacaaagcaaatgagaa 195
             ||||||||| ||||||||||||||
Sbjct: 12257 aacaaacaaaaaagcaaatgagaa 12280
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>ref|XM_662251.1| Cryptosporidium hominis TU502 transmembrane protein (Chro.10115)
            partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  ataatcagcaagaacaaaca 179
            ||||||||||||||||||||
Sbjct: 1061 ataatcagcaagaacaaaca 1080
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     aattatcaacaaacaaacaa 259
               ||||||||||||||||||||
Sbjct: 5127222 aattatcaacaaacaaacaa 5127203
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>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tcagcaagaacaaacaacaa 183
              ||||||||||||||||||||
Sbjct: 112288 tcagcaagaacaaacaacaa 112307
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>ref|XM_627941.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_950),
            partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  ataatcagcaagaacaaaca 179
            ||||||||||||||||||||
Sbjct: 1061 ataatcagcaagaacaaaca 1080
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>dbj|AK032638.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:6530401I12 product:hypothetical
            Tudor domain containing protein, full insert sequence
          Length = 3204

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1443 cagagttaatacaagccaag 1462
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>dbj|AK047341.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930051F23
            product:unclassifiable, full insert sequence
          Length = 3440

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aacaaagcaaatgagaatat 198
            ||||||||||||||||||||
Sbjct: 1252 aacaaagcaaatgagaatat 1271
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>dbj|AK040888.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530038E15 product:hypothetical
           Bipartite nuclear localization signal/PHD-finger
           containing protein, full insert sequence
          Length = 2433

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 159 cagagttaatacaagccaag 178
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>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence
          Length = 167471

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   cagcaagaacaaacaacaaa 184
             ||||||||||||||||||||
Sbjct: 73852 cagcaagaacaaacaacaaa 73871
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>dbj|AK206721.1| Mus musculus cDNA, clone:Y2G0105L15, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000048188, based on BLAT search
          Length = 396

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cagagttaatacaagccaag 33
           ||||||||||||||||||||
Sbjct: 119 cagagttaatacaagccaag 138
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>gb|BC082777.1| Mus musculus PHD finger protein 20-like 1, mRNA (cDNA clone
            IMAGE:4021377), partial cds
          Length = 2039

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagagttaatacaagccaag 33
            ||||||||||||||||||||
Sbjct: 1423 cagagttaatacaagccaag 1442
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     gagttaatacaagccaagcc 35
              ||||||||||||||||||||
Sbjct: 491652 gagttaatacaagccaagcc 491633
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>dbj|AP003461.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-37O16, complete
            sequence
          Length = 74640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ctcaattatcaacaaacaaa 256
            ||||||||||||||||||||
Sbjct: 3084 ctcaattatcaacaaacaaa 3103
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 167     gcaagaacaaacaacaaagc 186
               ||||||||||||||||||||
Sbjct: 2500867 gcaagaacaaacaacaaagc 2500886
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>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete
             sequence
          Length = 212364

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   aacaaagcaaatgagaatat 198
             ||||||||||||||||||||
Sbjct: 70599 aacaaagcaaatgagaatat 70580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,329,620
Number of Sequences: 3902068
Number of extensions: 4329620
Number of successful extensions: 115857
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115647
Number of HSP's gapped (non-prelim): 210
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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