>DERL1_CAEEL (Q93561) Derlin-1 (DER1-like protein 1) (cDerlin-1)|
          Length = 245

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 169 FWRLLVHLLYFSIKVEITFHWL 104
           FWR L  L+Y+ +  +  FHWL
Sbjct: 51  FWRPLTALIYYPVTPQTGFHWL 72

>TF3A_RANPI (P34695) Transcription factor IIIA (Factor A) (TFIIIA)|
          Length = 335

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 113 SLVVMGIKPCTWDKPEVSLSFEVMKHLR 30
           S+   G KPC  D P+  LSF  M +LR
Sbjct: 64  SMTHTGEKPCKCDAPDCDLSFTTMTNLR 91

>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)|
            (PEM) (PEMT) (Episialin) (Tumor-associated mucin)
            (Carcinoma-associated mucin) (Tumor-associated epithelial
            membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary
            mucin) (PUM)
          Length = 1255

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 286  KSTPSGFVAHSQDTPPPLIAHPTK 215
            KSTP    +H  DTP  L +H TK
Sbjct: 988  KSTPFSIPSHHSDTPTTLASHSTK 1011

>MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)|
          Length = 475

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 286 KSTPSGFVAHSQDTPPPLIAHPTK 215
           KSTP    +H  DTP  L +H TK
Sbjct: 208 KSTPFSIPSHHSDTPTTLTSHSTK 231

>DSC2_BOVIN (P33545) Desmocollin-2 precursor (Epithelial type 2 desmocollin)|
           (Fragment)
          Length = 863

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 110 VKGNLNFNAKVKQVNKETPKGNSNSDRRRLQSSEPFGWM---SNQGWWCVLTMSDETAGC 280
           +K N+    K        P+  S+S  R  +SS+P GW+    N G   +L   D  A  
Sbjct: 432 IKENVPVGTKTIGYKAYDPETGSSSGIRYKKSSDPEGWVDVDKNSGVITILKRLDREA-- 489

Query: 281 RFLRLTTWQVSISSSEDD 334
              R   + +SI +S+ D
Sbjct: 490 ---RSGVYNISIIASDKD 504

>Y243_ARCFU (O29996) Hypothetical protein AF0243|
          Length = 529

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 351 RNNQTASSSEEEIDTCHVVNRRNRHPAVSSL 259
           R N  A+S EE +    ++NR  RHP+ + L
Sbjct: 299 RKNSLAASPEEVMFAIELINRYGRHPSYNGL 329

>BLAN_SERMA (P52682) Carbapenem-hydrolysing beta-lactamase Sme-1 precursor (EC|
           3.5.2.6)
          Length = 294

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 116 GNLNFNAKVKQVNKETPKGNSNSDRRRLQSSEPFGWMSNQGWWCVLTMSDETAGC 280
           GN+  NAKVK + +   KGN+  D  R+++S P  W+          + D+T  C
Sbjct: 200 GNV-LNAKVKAIYQNWLKGNTTGD-ARIRASVPADWV----------VGDKTGSC 242

>LRP8_CHICK (Q98931) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2) (LR8B protein)
          Length = 917

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 208 RAVWLDEQSRVVVCPDYERRNRWVSISSVNNMA 306
           R  W+D +   + C D+   NR V ISS+++++
Sbjct: 611 RLYWVDSKLHSLSCIDFNGSNREVLISSIDDLS 643

>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 286 KSTPSGFV--AHSQDTPPPLIAHPTKRL 209
           K+ P GFV  AH+ +TP   +AH  +RL
Sbjct: 145 KALPEGFVRLAHTANTPEAAVAHLQRRL 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,347,648
Number of Sequences: 219361
Number of extensions: 950439
Number of successful extensions: 2571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2571
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)