>emb|AJ621594.1| Tetraodon nigroviridis partial TY3/GYPSY-like LTR retrotransposon
           Rex8_Tet
          Length = 2726

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 318 cttcttcagaagatgatgcagt 339
           ||||||||||||||||||||||
Sbjct: 712 cttcttcagaagatgatgcagt 691

>gb|AC148757.2| Medicago truncatula clone mth2-57e16, complete sequence
          Length = 90963

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   gtttggttggatgagcaatca 234
             |||||||||||||||||||||
Sbjct: 88466 gtttggttggatgagcaatca 88446

>gb|AC107946.4| Homo sapiens chromosome 15, clone RP11-68C15, complete sequence
          Length = 147885

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   gtttcatcacttcaaaagaaa 58
            |||||||||||||||||||||
Sbjct: 5671 gtttcatcacttcaaaagaaa 5691

>gb|AC104034.6| Homo sapiens chromosome 15, clone RP11-627K17, complete sequence
          Length = 162607

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   gtttcatcacttcaaaagaaa 58
            |||||||||||||||||||||
Sbjct: 2685 gtttcatcacttcaaaagaaa 2705

>gb|AC083816.21|AC083816 Mus musculus X BAC RP23-330G24 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 187691

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     tttcatcacttcaaaagaaag 59
              |||||||||||||||||||||
Sbjct: 186815 tttcatcacttcaaaagaaag 186835

>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    gtttcatcacttcaaaagaaa 58
             |||||||||||||||||||||
Sbjct: 60610 gtttcatcacttcaaaagaaa 60630

>gb|AC153833.5| Mus musculus 6 BAC RP23-308F24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 170164

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   atctcaactttaatgctaaag 140
             |||||||||||||||||||||
Sbjct: 85686 atctcaactttaatgctaaag 85706

>emb|AL805964.5| Mouse DNA sequence from clone RP23-450K2 on chromosome X, complete
            sequence
          Length = 3994

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 39   tttcatcacttcaaaagaaag 59
            |||||||||||||||||||||
Sbjct: 2871 tttcatcacttcaaaagaaag 2851

>emb|AL607073.15| Mouse DNA sequence from clone RP23-321K1 on chromosome 4, complete
             sequence
          Length = 95219

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ttcaaaagaaagagaaacttc 68
             |||||||||||||||||||||
Sbjct: 64737 ttcaaaagaaagagaaacttc 64757

>gb|AF064864.1| Homo sapiens chromosome 21q22.3 PAC 21L13, complete sequence
          Length = 120007

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     tttcatcacttcaaaagaaa 58
              ||||||||||||||||||||
Sbjct: 118681 tttcatcacttcaaaagaaa 118662

>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227955

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    aagtacagggttttatacccattacaac 107
             |||||| |||||||||||||| ||||||
Sbjct: 14270 aagtactgggttttatacccaatacaac 14297

>gb|AC092268.4| Homo sapiens chromosome X clone RP11-185O17 map p11.4, complete sequence
          Length = 183539

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     tttcatcacttcaaaagaaa 58
              ||||||||||||||||||||
Sbjct: 134849 tttcatcacttcaaaagaaa 134830

>gb|BT014165.1| Lycopersicon esculentum clone 133289F, mRNA sequence
          Length = 1476

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 ttcttcagaagatgatgcag 338
           ||||||||||||||||||||
Sbjct: 158 ttcttcagaagatgatgcag 139

>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    ctcaactttaatgctaaagt 141
              ||||||||||||||||||||
Sbjct: 382934 ctcaactttaatgctaaagt 382953

>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    gggtttatcccaagtacagg 88
             ||||||||||||||||||||
Sbjct: 44694 gggtttatcccaagtacagg 44713

>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     tttcatcacttcaaaagaaa 58
              ||||||||||||||||||||
Sbjct: 203944 tttcatcacttcaaaagaaa 203925

>emb|AL109932.15|HSDJ770C6 Human DNA sequence from clone RP4-770C6 on chromosome 1, complete
             sequence
          Length = 99340

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tttcatcacttcaaaagaaa 58
             ||||||||||||||||||||
Sbjct: 40018 tttcatcacttcaaaagaaa 40037

>gb|AC128652.4| Homo sapiens 3 BAC RP11-20C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 53194

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   caaccagtgaaaggtaatct 123
             ||||||||||||||||||||
Sbjct: 13008 caaccagtgaaaggtaatct 12989

>gb|AC165264.2| Mus musculus BAC clone RP23-36M22 from chromosome 17, complete sequence
          Length = 185631

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttaatgctaaagtaaagcag 148
             ||||||||||||||||||||
Sbjct: 43189 ttaatgctaaagtaaagcag 43208

>emb|AL954236.1| Pan troglodytes chromosome 22 clone RP43-054L10 map 22q22.2-q22.3,
             complete sequence
          Length = 195913

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    tttcatcacttcaaaagaaa 58
             ||||||||||||||||||||
Sbjct: 10110 tttcatcacttcaaaagaaa 10091

>emb|AL954235.1| Pan troglodytes chromosome 22 clone RP43-030A20 map 22q22.2-q22.3,
              complete sequence
          Length = 169458

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     tttcatcacttcaaaagaaa 58
              ||||||||||||||||||||
Sbjct: 109623 tttcatcacttcaaaagaaa 109604

>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence
          Length = 112570

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 80     aagtacagggttttatacccattacaac 107
              |||||| |||||||||||||| ||||||
Sbjct: 100977 aagtactgggttttatacccaatacaac 100950

>gb|AC025656.7| Homo sapiens chromosome 18, clone RP11-36L19, complete sequence
          Length = 193351

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tttggttggatgagcaatca 234
             ||||||||||||||||||||
Sbjct: 92023 tttggttggatgagcaatca 92004

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aagaaagagaaacttcgggt 72
              ||||||||||||||||||||
Sbjct: 356680 aagaaagagaaacttcgggt 356699

>gb|AF064866.2|AF064866 Homo sapiens chromosome 21 clone PAC 198E8, map 21q22.3, complete
             sequence
          Length = 119847

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    tttcatcacttcaaaagaaa 58
             ||||||||||||||||||||
Sbjct: 17255 tttcatcacttcaaaagaaa 17236

>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 32      taagatgtttcatcacttca 51
               ||||||||||||||||||||
Sbjct: 1008444 taagatgtttcatcacttca 1008425

>gb|AC151045.3| Macropus eugenii clone ME_KBa-444G7, complete sequence
          Length = 108527

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   ctcaactttaatgctaaagt 141
             ||||||||||||||||||||
Sbjct: 36600 ctcaactttaatgctaaagt 36619

>gb|AC145408.3| Macropus eugenii clone ME_KBa-210L14, complete sequence
          Length = 175088

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    ctcaactttaatgctaaagt 141
              ||||||||||||||||||||
Sbjct: 143648 ctcaactttaatgctaaagt 143667

>gb|AC144690.3| Didelphis virginiana clone LB3-234D12, complete sequence
          Length = 164830

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   ctcaactttaatgctaaagt 141
             ||||||||||||||||||||
Sbjct: 38645 ctcaactttaatgctaaagt 38664

>emb|AJ330269.1|HSA330269 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-FA17R
          Length = 751

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 163 gccaaaaggtaattcaaatagcga 186
           |||||||||||||||||| |||||
Sbjct: 636 gccaaaaggtaattcaaaaagcga 659

>gb|AC006221.1|AC006221 Homo sapiens chromosome 18, clone hRPK.142_O_10, complete sequence
          Length = 79085

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tttggttggatgagcaatca 234
             ||||||||||||||||||||
Sbjct: 64781 tttggttggatgagcaatca 64762

>dbj|AP005403.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-183C12, complete
             sequence
          Length = 155133

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   gccaaaaggtaattcaaatagcga 186
             |||||||||||||||||| |||||
Sbjct: 46602 gccaaaaggtaattcaaaaagcga 46625

>emb|AJ544599.1|TRU544599 Takifugu rubripes dmd gene upstream region 5
          Length = 9583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   atcacttcaaaagaaagaga 62
            ||||||||||||||||||||
Sbjct: 4049 atcacttcaaaagaaagaga 4030

>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    ctcaactttaatgctaaagt 141
              ||||||||||||||||||||
Sbjct: 451094 ctcaactttaatgctaaagt 451113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,948,384
Number of Sequences: 3902068
Number of extensions: 3948384
Number of successful extensions: 93813
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93713
Number of HSP's gapped (non-prelim): 100
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)