ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38d07 |
|---|---|
| Clone Library Name | barley_pub |
>EPIPL_MOUSE (Q8R0W0) Epiplakin| Length = 6548 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 350 EEQLDRCEEGRMVVAAVRREEDATRYAAMMSKAAGIGREICGDGAKCE 207 ++ L+ EEGR V + R+ED RY S AG+ + G+ + E Sbjct: 2202 KQTLEDLEEGRTTVDQIERKEDVKRYLKGTSCIAGVLVPVQGEPGRQE 2249
>KI18A_MOUSE (Q91WD7) Kinesin family member 18A| Length = 886 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 69 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 200 T L +Q + C S ++ LK+ R RR +P P+++QH Sbjct: 637 TFPQLEPIQSISCCTSVSDPNVLKLTPQRRTRRKIIPSPLKVQH 680
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 69 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 200 T L VQ + C SS T +K+ R RR +P P++ QH Sbjct: 637 TFPQLGPVQPIPCCSSSGGTNLVKIPTEKRTRRKLMPSPLKGQH 680
>ACOT4_HUMAN (Q8N9L9) Acyl-coenzyme A thioesterase 4 (EC 3.1.2.2) (Acyl-CoA| thioesterase 4) (Peroxisomal acyl coenzyme A thioester hydrolase Ib) (Peroxisomal long-chain acyl-coA thioesterase Ib) (PTE-Ib) (PTE-2b) Length = 421 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +3 Query: 144 IICH-RHRRHFLPDPVQLQHERLAFGAVPADLPPDPG 251 ++C +H RHFLP V+ Q R LPP PG Sbjct: 119 LLCQAQHERHFLPPGVRRQSVRAGRVRATLFLPPGPG 155
>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate| filament-associated protein) (IFAP300) (Fragment) Length = 4473 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 347 EQLDRCEEGRMVVAAVRREEDATRYAAMMSKAAGI 243 E+L R E+G VA + + ED +Y S AG+ Sbjct: 2593 EELQRLEQGHTTVAELSQREDVRQYLQGRSSIAGL 2627
>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 33 MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHLK 140 + Y SS R+ + AH +Q V +ST TYHL+ Sbjct: 132 INQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLR 167
>DHAS_METTH (O26890) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 347 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 407 GIDEIPEKYIMARWTDGCREEQLDRCEEGRMVVAAVRREEDA 282 G+ PEK ++ R + + ++DR +G M V R EDA Sbjct: 272 GLHSAPEKPVVVRDEENRPQPRMDRDMDGGMAVTVGRLREDA 313
>DHMH_PARDE (P29894) Methylamine dehydrogenase heavy chain precursor (EC| 1.4.99.3) (MADH) Length = 417 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -2 Query: 169 WRR*RWQMITF-----RWYVLVELGRQWTC*TAARCAIVLARKEEE 47 WR WQ + + R Y+LV+ +W TA+R +VL K E Sbjct: 308 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGE 353
>SEF1_YEAST (P34228) Suppressor protein SEF1| Length = 1057 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -3 Query: 129 TCWLSLGDSGHVEQQQDVLLFWPGRRRK----CSSSFI 28 TCW+ S H+ Q +L WP +K CS F+ Sbjct: 413 TCWIRTPRSTHISQALLILCIWPLPNQKVLDDCSYRFV 450
>DAPF_SYNY3 (P74667) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 279 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -1 Query: 290 EDATRYAAMMSKAAGIGREICGDGAKCEA-FMLELDRIREK 171 + T Y + + G E+CG+G +C A F+ +L+ + EK Sbjct: 55 QGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK 95
>SYN_UREPA (Q9PQC6) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 454 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 350 EEQLDRCEEGRMVVAAVRREEDATRYAAMMSKAAGIGRE 234 E+ L RC+E +M + +++ D R+ MS GIG E Sbjct: 389 EKLLKRCQELKMPIESLQWYLDLRRFGYYMSSGFGIGFE 427
>PUR8_SYNY3 (P74384) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)| (ASL) Length = 431 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = -1 Query: 329 EEGRMVVAAVRREEDATRYAAMMSKAAGIGREICGDGAKCEAFMLELDRIREKMATMTMA 150 E+ ++ A+R + RY M+ ++ GI E G K ++ E+ R R+++ + + Sbjct: 115 EQLEKLIQAIRYQAQQHRYTVMVGRSHGIHAEPITFGFKLAGWLAEVLRNRDRLVRVAQS 174
>ACOT2_HUMAN (P49753) Acyl-coenzyme A thioesterase 2 (EC 3.1.2.2) (Acyl-CoA| thioesterase 2) (Peroxisomal acyl-coenzyme A thioester hydrolase 2a) (Peroxisomal long-chain acyl-coA thioesterase 2) (ZAP128) (CTE-Ia) Length = 483 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 144 IICH-RHRRHFLPDPVQLQHERLAFGAVPADLPPDPG 251 ++C RH R+FLP V+ + R+ LPP+PG Sbjct: 181 LLCQTRHERYFLPPGVRREPVRVGRVRGTLFLPPEPG 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,661,329 Number of Sequences: 219361 Number of extensions: 701066 Number of successful extensions: 2033 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2033 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
