ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 208 1e-50
2dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 208 1e-50
3ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predic... 204 2e-49
4gb|AY109443.1| Zea mays CL3420_1 mRNA sequence 186 4e-44
5dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
6ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
7ref|XM_320774.2| Anopheles gambiae str. PEST ENSANGP00000014036 ... 44 0.38
8gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete... 42 1.5
9emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chro... 42 1.5
10gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 5.9
11gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 5.9
12gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cance... 40 5.9
13ref|XM_949683.1| Theileria annulata strain Ankara hypothetical p... 40 5.9
14gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete s... 40 5.9
15emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chr... 40 5.9
16emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chr... 40 5.9
17emb|AL139008.10| Human DNA sequence from clone RP11-255A11 on ch... 40 5.9
18emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin... 40 5.9
19emb|AJ307686.2|EIS307686 Ectomycorrhizal isolate ECM 31 5.8S rRN... 40 5.9
20emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, com... 40 5.9
21gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, com... 40 5.9
22dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells ... 40 5.9
23gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, r... 40 5.9
24gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:51... 40 5.9
25gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, comple... 40 5.9
26gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6,... 40 5.9
27ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predict... 40 5.9
28dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein 40 5.9
29emb|AL929242.16| Mouse DNA sequence from clone RP23-78D16 on chr... 40 5.9
30dbj|AB023031.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
31emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 ma... 40 5.9
32gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33... 40 5.9
33gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, comp... 40 5.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  208 bits (105), Expect = 1e-50
 Identities = 216/253 (85%)
 Strand = Plus / Minus

                                                                            
Query: 183      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
                |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 32987631 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 32987572

                                                                            
Query: 243      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
                |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 32987571 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 32987512

                                                                            
Query: 303      gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
                ||||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |
Sbjct: 32987511 gccttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgt 32987452

                                                                            
Query: 363      tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
                ||||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 32987451 tgaggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagc 32987392

                             
Query: 423      tctcttagcagag 435
                |||||||| ||||
Sbjct: 32987391 tctcttaggagag 32987379



 Score =  178 bits (90), Expect = 1e-41
 Identities = 213/254 (83%)
 Strand = Plus / Minus

                                                                            
Query: 183      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
                |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 32969862 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 32969803

                                                                            
Query: 243      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
                |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 32969802 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 32969743

                                                                            
Query: 303      gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
                |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 32969742 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 32969683

                                                                            
Query: 363      tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
                ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 32969682 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 32969623

                              
Query: 423      tctcttagcagagc 436
                |||||||| |||||
Sbjct: 32969622 tctcttagaagagc 32969609
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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  208 bits (105), Expect = 1e-50
 Identities = 216/253 (85%)
 Strand = Plus / Minus

                                                                         
Query: 183   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
             |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 53859 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 53800

                                                                         
Query: 243   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
             |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 53799 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 53740

                                                                         
Query: 303   gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
             ||||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |
Sbjct: 53739 gccttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgt 53680

                                                                         
Query: 363   tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
             ||||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 53679 tgaggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagc 53620

                          
Query: 423   tctcttagcagag 435
             |||||||| ||||
Sbjct: 53619 tctcttaggagag 53607



 Score =  178 bits (90), Expect = 1e-41
 Identities = 213/254 (83%)
 Strand = Plus / Minus

                                                                         
Query: 183   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
             |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 36090 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 36031

                                                                         
Query: 243   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
             |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 36030 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 35971

                                                                         
Query: 303   gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
             |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 35970 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 35911

                                                                         
Query: 363   tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
             ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 35910 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 35851

                           
Query: 423   tctcttagcagagc 436
             |||||||| |||||
Sbjct: 35850 tctcttagaagagc 35837
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>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                        
Query: 185  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 244
            |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||||
Sbjct: 2838 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggatcg 2779

                                                                        
Query: 245  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 304
            |||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || ||
Sbjct: 2778 cttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaatagc 2719

                                                                        
Query: 305  cttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctttg 364
            ||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |||
Sbjct: 2718 cttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgttg 2659

                                                                        
Query: 365  aggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagctc 424
            ||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 2658 aggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagctc 2599

                       
Query: 425  tcttagcagag 435
            |||||| ||||
Sbjct: 2598 tcttaggagag 2588
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>gb|AY109443.1| Zea mays CL3420_1 mRNA sequence
          Length = 1424

 Score =  186 bits (94), Expect = 4e-44
 Identities = 211/250 (84%)
 Strand = Plus / Plus

                                                                       
Query: 183 tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
           ||||||||||| ||||||| ||| ||||||||||| || |||| || ||| ||||  |||
Sbjct: 159 tgtcagtccatggtgatcctgcccggacctcccttgagtgagctgtacagcggcctcgat 218

                                                                       
Query: 243 cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
           || ||||||||||||||||| ||||| | | |  |||||||| ||||  | |||  ||| 
Sbjct: 219 cgtttgaagccgaatatgtctgtaattctgtacattttgggcgggtcggcttcgttgatt 278

                                                                       
Query: 303 gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
           ||||||||||||||| || |||||||||||| |||||| |||||||| | ||||||||||
Sbjct: 279 gccttcttgaactctaccaaatggttgccgccgaagacttgcacgcttagtgtcctcctt 338

                                                                       
Query: 363 tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
           ||||| |||||||| ||||| ||||  |  ||| | ||||||||||||||||||||||||
Sbjct: 339 tgaggcgcgtccacttttatatactggttgaagtactcgatgaattcttctttcttgagc 398

                     
Query: 423 tctcttagca 432
           ||||||||||
Sbjct: 399 tctcttagca 408
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>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
            insert sequence
          Length = 3262

 Score =  178 bits (90), Expect = 1e-41
 Identities = 213/254 (83%)
 Strand = Plus / Minus

                                                                        
Query: 183  tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 242
            |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 3047 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 2988

                                                                        
Query: 243  cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 302
            |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 2987 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 2928

                                                                        
Query: 303  gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 362
            |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 2927 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 2868

                                                                        
Query: 363  tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 422
            ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 2867 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 2808

                          
Query: 423  tctcttagcagagc 436
            |||||||| |||||
Sbjct: 2807 tctcttagaagagc 2794
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>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  174 bits (88), Expect = 2e-40
 Identities = 211/252 (83%)
 Strand = Plus / Minus

                                                                        
Query: 185  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 244
            |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||||
Sbjct: 2841 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggatcg 2782

                                                                        
Query: 245  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 304
            |||||||||||||||||| || || ||| ||||||||||    ||| | || || || ||
Sbjct: 2781 cttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatggc 2722

                                                                        
Query: 305  cttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctttg 364
            |||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||||
Sbjct: 2721 cttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctttg 2662

                                                                        
Query: 365  aggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagctc 424
            ||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||||
Sbjct: 2661 aggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagctc 2602

                        
Query: 425  tcttagcagagc 436
            |||||| |||||
Sbjct: 2601 tcttagaagagc 2590
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>ref|XM_320774.2| Anopheles gambiae str. PEST ENSANGP00000014036
           (ENSANGG00000011547), partial mRNA
          Length = 1506

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 289 catcctcggcgatcgccttcttgaac 314
           |||||||||||||||||||| |||||
Sbjct: 634 catcctcggcgatcgccttcgtgaac 609
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>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    gagaaaaatcaatcaaaattg 131
              |||||||||||||||||||||
Sbjct: 121168 gagaaaaatcaatcaaaattg 121188
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>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
             sequence
          Length = 127959

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   gagaaaaatcaatcaaaattg 131
             |||||||||||||||||||||
Sbjct: 73150 gagaaaaatcaatcaaaattg 73170
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 399     tcgatgaattcttctttctt 418
               ||||||||||||||||||||
Sbjct: 1767737 tcgatgaattcttctttctt 1767718
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 399     tcgatgaattcttctttctt 418
               ||||||||||||||||||||
Sbjct: 1768583 tcgatgaattcttctttctt 1768564
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>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ccggcctggacctcccttca 219
             ||||||||||||||||||||
Sbjct: 79761 ccggcctggacctcccttca 79780
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>ref|XM_949683.1| Theileria annulata strain Ankara hypothetical protein (TA02490)
            partial mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 401  gatgaattcttctttcttgagctc 424
            |||||||||||||||||| |||||
Sbjct: 2442 gatgaattcttctttcttaagctc 2419
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>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agaaaaatcaatcaaaattg 131
             ||||||||||||||||||||
Sbjct: 72527 agaaaaatcaatcaaaattg 72508
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>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four
              novel genes, a novel gene similar to FLJ23393. the 5' end
              of a novel gene (KIAA1529) and two CpG islands, complete
              sequence
          Length = 130244

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    aatcaatcaaaattgggttc 136
              ||||||||||||||||||||
Sbjct: 104751 aatcaatcaaaattgggttc 104770
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>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a
              novel pseudogene and a keratin 18 (KRT18) (K18, CYK18)
              pseudogene, complete sequence
          Length = 156442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    agaaaaatcaatcaaaattg 131
              ||||||||||||||||||||
Sbjct: 103271 agaaaaatcaatcaaaattg 103252
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>emb|AL139008.10| Human DNA sequence from clone RP11-255A11 on chromosome 9 Contains
            four novel genes, the gene for a novel protein similar to
            suppressor of G2 allele of SKP1 homolog, the gene for a
            novel protein similar to KIAA1074, a melanoma antigen
            pseudogene, a sorting nexin 18 (SNX18) pseudogene, a
            trypsin domain pseudogene, two genes for novel
            immunoglobulin domain containing proteins, the gene for a
            novel protein similar to annexin A2 (ANXA2), the gene for
            a novel protein similar to T-cell receptor beta chain V
            region proteins, a T-cell receptor beta chain V region
            protein LB2 pseudogene and two CpG islands, complete
            sequence
          Length = 159974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  aatcaatcaaaattgggttc 136
            ||||||||||||||||||||
Sbjct: 3979 aatcaatcaaaattgggttc 3960
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>emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin (dysf gene)
          Length = 5078

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  ccggcctggacctcccttca 219
            ||||||||||||||||||||
Sbjct: 3995 ccggcctggacctcccttca 4014
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>emb|AJ307686.2|EIS307686 Ectomycorrhizal isolate ECM 31 5.8S rRNA gene and ITS 1 and 2
          Length = 507

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tcaaagaattcgatgaattc 409
           ||||||||||||||||||||
Sbjct: 291 tcaaagaattcgatgaattc 310
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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   aaatcaatcaaaattgggttcatg 139
             ||||||| ||||||||||||||||
Sbjct: 87668 aaatcaaacaaaattgggttcatg 87691
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>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   gagaaaaatcaatcaaaatt 130
             ||||||||||||||||||||
Sbjct: 32444 gagaaaaatcaatcaaaatt 32425
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>dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001M20
            product:dysferlin, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  ccggcctggacctcccttca 219
            ||||||||||||||||||||
Sbjct: 1449 ccggcctggacctcccttca 1468
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>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    gaaaaatcaatcaaaattgggttc 136
              ||||||||||||||||||| ||||
Sbjct: 145734 gaaaaatcaatcaaaattgtgttc 145711
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>gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:5150289), partial
           cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 ccggcctggacctcccttca 219
           ||||||||||||||||||||
Sbjct: 949 ccggcctggacctcccttca 968
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>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   agaaaaatcaatcaaaattg 131
             ||||||||||||||||||||
Sbjct: 45960 agaaaaatcaatcaaaattg 45941
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>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    agaaaaatcaatcaaaattg 131
              ||||||||||||||||||||
Sbjct: 154108 agaaaaatcaatcaaaattg 154127
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>ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted),
            mRNA
          Length = 6810

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  ccggcctggacctcccttca 219
            ||||||||||||||||||||
Sbjct: 5673 ccggcctggacctcccttca 5692
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>dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein
          Length = 6660

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  ccggcctggacctcccttca 219
            ||||||||||||||||||||
Sbjct: 5574 ccggcctggacctcccttca 5593
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>emb|AL929242.16| Mouse DNA sequence from clone RP23-78D16 on chromosome 2, complete
              sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 332    gctgaagacctgcacgctcactgt 355
              ||||||||||||| ||||||||||
Sbjct: 175662 gctgaagacctgcccgctcactgt 175685
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>dbj|AB023031.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2K18
          Length = 41465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   aaagaattcgatgaattctt 411
             ||||||||||||||||||||
Sbjct: 40834 aaagaattcgatgaattctt 40853
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>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    agaaaaatcaatcaaaattg 131
              ||||||||||||||||||||
Sbjct: 115205 agaaaaatcaatcaaaattg 115224
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>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    gaaaaatcaatcaaaattgggttc 136
              ||||||||||||||||||| ||||
Sbjct: 199509 gaaaaatcaatcaaaattgtgttc 199486
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>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence
          Length = 139303

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   gagaaaaatcaatcaaaatt 130
             ||||||||||||||||||||
Sbjct: 15634 gagaaaaatcaatcaaaatt 15615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,346,435
Number of Sequences: 3902068
Number of extensions: 3346435
Number of successful extensions: 64590
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64481
Number of HSP's gapped (non-prelim): 104
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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