ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38d05 |
|---|---|
| Clone Library Name | barley_pub |
>TIAM1_HUMAN (Q13009) T-lymphoma invasion and metastasis-inducing protein 1| (TIAM-1 protein) Length = 1591 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%) Frame = +2 Query: 311 LSRLKKYKLLARE---------QETFYHSVAVKTSHATAGHLNSCQNV 427 + R+ KY LL RE +E ++ VA+KT + A H+N Q + Sbjct: 1190 IQRILKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKI 1237
>TIAM1_MOUSE (Q60610) T-lymphoma invasion and metastasis-inducing protein 1| (TIAM-1 protein) Length = 1591 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%) Frame = +2 Query: 311 LSRLKKYKLLARE---------QETFYHSVAVKTSHATAGHLNSCQNV 427 + R+ KY LL RE +E ++ VA+KT + A H+N Q + Sbjct: 1190 IQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKI 1237
>YJ4A_SCHPO (P78797) Hypothetical proline-rich protein C70.10 precursor| Length = 155 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = +3 Query: 165 NPTATRGGINMSSIYHIPLVTVDLKPRDYSLRYTHTQSVSLCSATYAANLAGSKNTNYSP 344 +PT+ + +++Y P+ + PR S+RYTH + + T + NL YSP Sbjct: 61 SPTSPQSAYVPATVYTSPIGS----PRRGSVRYTHVMAHPNTTTTVSENLPEEVPPPYSP 116 Query: 345 GSRKPST 365 + +T Sbjct: 117 AATASNT 123
>NCX6_CAEEL (P34315) Putative sodium/calcium exchanger 6 precursor| (Na(+)/Ca(2+)-exchange protein 6) Length = 590 Score = 29.6 bits (65), Expect = 3.3 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Frame = -2 Query: 178 VAVGLGFTSLACISLKSLAVNFSTKY*LLPPFLNIR---------PSRYFIRRLHTKQDE 26 + GL FT +A I KS+++ + Y LL FL I +YF+RR+H+ Sbjct: 511 IGFGLPFT-IAKIQGKSISMIINPTYRLLMLFLAISLIFTLIAMFAQKYFLRRIHSYSLV 569 Query: 25 WIYILKYV 2 +IYI +V Sbjct: 570 FIYISFFV 577
>MIS_MOUSE (P27106) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 555 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%) Frame = +2 Query: 125 QTFQ*NTCE-ACK-PQPDRDPRGYQHVVHL 208 +T+Q N C+ AC+ PQ DR+PR HVV L Sbjct: 476 ETYQANNCQGACRWPQSDRNPRYGNHVVLL 505
>PLXA1_HUMAN (Q9UIW2) Plexin-A1 precursor (Semaphorin receptor NOV)| Length = 1896 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 161 PQPDRDPRGYQHVVHLPHPPGN---SRFKTKGLQPEIHTYT 274 PQP RGY+ + H+P P RF + LQ + +Y+ Sbjct: 733 PQPQSGQRGYECLFHIPGSPARVTALRFNSSSLQCQNSSYS 773
>PM1_SOYBN (Q01417) 18 kDa seed maturation protein| Length = 173 Score = 28.9 bits (63), Expect = 5.7 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +2 Query: 236 KTKG-LQPEIHTYTEREPVFGNVRCKLSRLKKYKLLAREQETFYHSVAVKTSHATAGHLN 412 KTK +Q + T R+PV + + K + +Q H+ A K S TAGH+ Sbjct: 28 KTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMG 87 Query: 413 SCQNVT 430 + T Sbjct: 88 HGHHTT 93
>PLXA1_MOUSE (P70206) Plexin-A1 precursor (Plexin-1) (Plex 1)| Length = 1894 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 161 PQPDRDPRGYQHVVHLPHPPGN---SRFKTKGLQPEIHTYT 274 PQP RGY+ + H+P P RF + LQ + +Y+ Sbjct: 731 PQPQSGQRGYECLFHIPGSPARVTALRFNSSSLQCQNSSYS 771
>ACCN4_RAT (Q9JHS6) Amiloride-sensitive cation channel 4 (Acid-sensing ion| channel 4) (Spinal chord ASIC) Length = 539 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +2 Query: 191 QHVVHLPHPPGNSRFKTKGLQPEIHTYTEREPVFGNVRCK 310 Q + +LP P GN R ++K +PE+ Y+ +RC+ Sbjct: 284 QRLTYLPQPWGNCRAESKLREPELQGYSAYSVSACRLRCE 323
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 104 FC*KINGQTFQ*NTCEACKPQPDRDPRGYQHVVH 205 FC + +T + + +P R+P G+QH+VH Sbjct: 715 FCLREQSETSELHEAHGSQPSLPREPPGHQHLVH 748
>MURD_PARUW (Q6MBS4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 444 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 188 YQHVVHLPHPPGNSRFKTKGLQPEIHTYTEREPVF 292 YQH+++ PH T G P HTYT+ VF Sbjct: 229 YQHLLNFPH-------STYGYLPSCHTYTDLCSVF 256
>MIS_RAT (P49000) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 553 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = +2 Query: 125 QTFQ*NTCE-ACK-PQPDRDPRGYQHVVHL 208 +T+Q N C+ AC PQ DR+PR HVV L Sbjct: 474 ETYQANNCQGACAWPQSDRNPRYGNHVVLL 503
>CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.22)| (Serine/threonine-protein kinase 9) Length = 1030 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 219 LVTVDLKPRDYSLRYTHTQSVSLCSATYAANLAGSKNTNYS 341 +V D+KP + L +H + LC +A NL+ N NY+ Sbjct: 131 IVHRDIKPEN--LLISHNDVLKLCDFGFARNLSEGNNANYT 169
>MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 575 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = +2 Query: 125 QTFQ*NTCE-ACK-PQPDRDPRGYQHVVHL 208 +T+Q N C+ AC PQ DR+PR HVV L Sbjct: 496 ETYQANNCQGACGWPQSDRNPRYGNHVVLL 525 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,785,795 Number of Sequences: 219361 Number of extensions: 1359205 Number of successful extensions: 3079 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3079 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
