ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl38d04 |
|---|---|
| Clone Library Name | barley_pub |
>CSMC_CHLTE (Q46367) Chlorosome protein C (14 kDa chlorosome protein)| Length = 139 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +1 Query: 193 AGITKIDGGKSQCRGQTIERVAAAKKGRSRSVNDFYS 303 +GIT I GG G+TI+RVA K SRS + Y+ Sbjct: 61 SGITNILGGSGGVVGETIDRVAITVKDVSRSAGELYN 97
>CSMC_CHLVI (Q46466) Chlorosome protein C (14 kDa chlorosome protein)| Length = 139 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +1 Query: 193 AGITKIDGGKSQCRGQTIERVAAAKKGRSRSVNDFYS 303 +GI + GG G+TI+RVA K SRS D Y+ Sbjct: 61 SGIGNMLGGSGGVVGETIDRVAITVKDVSRSAGDLYN 97
>VANG1_MOUSE (Q80Z96) Vang-like protein 1 (Van Gogh-like protein 1) (Loop-tail| protein 2) Length = 526 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/72 (29%), Positives = 33/72 (45%) Frame = +1 Query: 85 SVRVLEHRLWDEKPDAPNYLITNTMQL*RYLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 +V VLE+ D PN L + R +H+ + +DG + GQ+ +AAA Sbjct: 278 AVVVLENYYKDFTIYNPNLLTASKF---RAAKHMAGLKVYNVDGPSNNATGQSRAMIAAA 334 Query: 265 KKGRSRSVNDFY 300 + R S N+ Y Sbjct: 335 ARRRDSSHNELY 346
>HRPB6_XANCV (P80153) Probable ATP synthase hrpB6 (EC 3.6.3.14)| Length = 442 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +1 Query: 169 RYLEHVVQAGITKIDGGKSQCRGQTIERVAAAKKGRSRSVNDFYSRGTCC 318 R +EH + G+ +DG + GQ + AAA G+S ++ ++RGT C Sbjct: 141 RLIEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKS-TLMGMFARGTQC 189
>VATB2_RAT (P62815) Vacuolar ATP synthase subunit B, brain isoform (EC| 3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) (Endomembrane proton pump 58 kDa subunit) Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 195
>VATB2_PONPY (Q5R5V5) Vacuolar ATP synthase subunit B, brain isoform (EC| 3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 195
>VATB2_MOUSE (P62814) Vacuolar ATP synthase subunit B, brain isoform (EC| 3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) (Endomembrane proton pump 58 kDa subunit) Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 195
>VATB2_HUMAN (P21281) Vacuolar ATP synthase subunit B, brain isoform (EC| 3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) (Endomembrane proton pump 58 kDa subunit) (HO57) Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 195
>VATB2_BOVIN (P31408) Vacuolar ATP synthase subunit B, brain isoform (EC| 3.6.3.14) (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) (Endomembrane proton pump 58 kDa subunit) Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 165 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 195
>VATB_SCHPO (P31411) Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B| subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) Length = 503 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 142 YPEEMIQTGISSIDGLNSIARGQKIPIFSAA 172
>VANG1_HUMAN (Q8TAA9) Vang-like protein 1 (Van Gogh-like protein 1) (Strabismus| 2) (Loop-tail protein 2 homolog) (LPP2) Length = 524 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +1 Query: 94 VLEHRLWDEKPDAPNYLITNTMQL*RYLEHVVQAGITKIDGGKSQCRGQTIERVAAAKKG 273 VLE+ D PN L + R +H+ + +DG + GQ+ +AAA + Sbjct: 279 VLENYYKDFTIYNPNLLTASKF---RAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARR 335 Query: 274 RSRSVNDFY 300 R S N+ Y Sbjct: 336 RDSSHNELY 344
>VATB_CHICK (P49712) Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B| subunit) (Vacuolar proton pump B subunit) Length = 453 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 172 YLEHVVQAGITKIDGGKSQCRGQTIERVAAA 264 Y E ++Q GI+ IDG S RGQ I +AA Sbjct: 106 YPEEMIQTGISAIDGMNSIARGQKIPIFSAA 136
>TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3 homolog) Length = 1084 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -1 Query: 218 PPSIFVIPACTTCSRYLHSCIVFVIR*FGASGFSSHSLCSSTRTDSGFSW 69 PP+ ACTT + + SC S +SHS +S + SG+ W Sbjct: 160 PPTSTASTACTTATTAITSC----------STSTSHSSTTSNSSSSGYDW 199
>SETX_HUMAN (Q7Z333) Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog)| Length = 2677 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 11 KMSPTLRRQQDKQNMGSTRTRKTHCLYAYSNT 106 K+SP +++ + MG T + HCL A S T Sbjct: 613 KISPASYNKEESEQMGKTSRKDMHCLEASSPT 644
>WNT5_DROME (P28466) Protein Wnt-5 precursor (dWnt-5) (dWnt-3)| Length = 1004 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/56 (25%), Positives = 22/56 (39%) Frame = -1 Query: 191 CTTCSRYLHSCIVFVIR*FGASGFSSHSLCSSTRTDSGFSWCASNPCSVCLVAFSE 24 C S L SC + G+++ ++ + R + F WC C VC E Sbjct: 949 CHKNSSGLESCAILCC----GRGYNTKNIIVNERCNCKFHWCCQVKCEVCTKVLEE 1000
>RNFD_HAEIN (Q57288) Electron transport complex protein rnfD| Length = 358 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = +3 Query: 165 VKVPRTRGTGWDYKNRWWQVSV 230 +K+P G G D+ WWQ++V Sbjct: 208 IKLPIFMGNGTDFAQGWWQINV 229
>SASA_SYNEL (Q8DMT2) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)| Length = 380 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 309 NMLSNGMKKPRGGGKIYVYLFQRVTNKTHLPFS 407 N+L N K GGKI++ F R+T K + S Sbjct: 280 NLLDNACKYTPEGGKIHLSAFHRMTQKVQVTVS 312
>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 812 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/28 (32%), Positives = 20/28 (71%) Frame = +1 Query: 43 QTEHGFDAHQENPLSVRVLEHRLWDEKP 126 QTE ++ ++ +P+S +L++ +WD+ P Sbjct: 559 QTEGPYETYEGSPVSKGILQYDMWDKVP 586 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,302,487 Number of Sequences: 219361 Number of extensions: 1392527 Number of successful extensions: 3660 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3654 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
