>emb|CR388011.14| Zebrafish DNA sequence from clone CH211-135J15 in linkage group 19,
             complete sequence
          Length = 163300

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 246   cgaacgtgttgctgctgcgaaga 268
             |||||||||||||||||||||||
Sbjct: 25552 cgaacgtgttgctgctgcgaaga 25574

>emb|BX950186.10| Zebrafish DNA sequence from clone CH211-103O18 in linkage group 15,
              complete sequence
          Length = 140307

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 394    atcttcccttttcagctcctt 414
              |||||||||||||||||||||
Sbjct: 137138 atcttcccttttcagctcctt 137118

>gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B23, complete sequence
          Length = 126010

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   caaactaccttattacaaata 154
             |||||||||||||||||||||
Sbjct: 45639 caaactaccttattacaaata 45659

>ref|XM_527549.1| PREDICTED: Pan troglodytes similar to Sorting nexin 9 (SH3 and PX
            domain-containing protein 1) (SDP1 protein) (LOC472172),
            mRNA
          Length = 3948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 3492 acaagacaaacagaacatgg 3511

>gb|AC116706.12| Mus musculus chromosome 1, clone RP23-37D15, complete sequence
          Length = 167357

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 394  atcttcccttttcagctcct 413
            ||||||||||||||||||||
Sbjct: 2214 atcttcccttttcagctcct 2195

>ref|XM_322928.1| Neurospora crassa OR74A hypothetical protein ( (AL513444)
           hypothetical protein [Neurospora crassa OR74A]  )
           (NCU03627.1) partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 tggaatgaagaaaccaaggg 342
           ||||||||||||||||||||
Sbjct: 624 tggaatgaagaaaccaaggg 605

>ref|XM_956261.1| Neurospora crassa OR74A hypothetical protein ( (AL513444)
           hypothetical protein [Neurospora crassa OR74A]  )
           (NCU03627.1) partial mRNA
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 tggaatgaagaaaccaaggg 342
           ||||||||||||||||||||
Sbjct: 624 tggaatgaagaaaccaaggg 605

>gb|DQ492684.1| Homo sapiens heat shock transcription factor 2 (HSF2) gene,
           complete cds
          Length = 37258

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 351 aagatatatgtatacctcttccaa 374
           |||||||||||||| |||||||||
Sbjct: 755 aagatatatgtatatctcttccaa 732

>ref|NM_016224.3| Homo sapiens sorting nexin 9 (SNX9), mRNA
          Length = 4200

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1766 acaagacaaacagaacatgg 1785

>gb|BC001084.2| Homo sapiens sorting nexin 9, mRNA (cDNA clone IMAGE:2958415),
           partial cds
          Length = 958

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  acaagacaaacagaacatgg 56
           ||||||||||||||||||||
Sbjct: 658 acaagacaaacagaacatgg 677

>gb|BT009742.1| Synthetic construct Homo sapiens sorting nexin 9 mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612

>emb|AL133352.12| Human DNA sequence from clone RP11-411B6 on chromosome 10 Contains the 3'
              end of the WNT8B gene for wingless-type MMTV integration
              site family member 8B, the gene for secretory pathway
              component Sec31B-1 (SEC31B-1), the NDUFB8 gene for NADH
              dehydrogenase (ubiquinone) 1 beta subcomplex 8, 19kDa, the
              HIF1AN gene for hypoxia-inducible factor 1, alpha subunit
              inhibitor and four CpG islands, complete sequence
          Length = 157808

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    ccaaggggtgggggcaagat 355
              ||||||||||||||||||||
Sbjct: 149617 ccaaggggtgggggcaagat 149636

>emb|AL121954.7|HSDJ506O9 Human DNA sequence from clone RP3-506O9 on chromosome 6q22.31-23.33
            Contains the 5' end of the HSF2 gene for heat shock
            transcription factor 2 and a  CpG island, complete
            sequence
          Length = 14185

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 351  aagatatatgtatacctcttccaa 374
            |||||||||||||| |||||||||
Sbjct: 9768 aagatatatgtatatctcttccaa 9745

>emb|AL035634.7|HS403L10 Human DNA sequence from clone RP3-403L10 on chromosome 6q25.1-26
           Contains part of the SNX9 gene for sorting nexin 9 (SH3
           and PX domain-containing protein (SH3PX1, SDP1),
           FLJ22984), an HSPE1 (heat shock 10kD protein 1
           (chaperonin 10)) pseudogene and a novel gene, complete
           sequence
          Length = 60215

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  acaagacaaacagaacatgg 56
           ||||||||||||||||||||
Sbjct: 192 acaagacaaacagaacatgg 173

>emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2
          Length = 99360

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   tggaatgaagaaaccaaggg 342
             ||||||||||||||||||||
Sbjct: 52836 tggaatgaagaaaccaaggg 52817

>gb|BC005022.1| Homo sapiens sorting nexin 9, mRNA (cDNA clone MGC:12550
            IMAGE:3832234), complete cds
          Length = 2065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1764 acaagacaaacagaacatgg 1783

>dbj|AK127345.1| Homo sapiens cDNA FLJ45417 fis, clone BRHIP3033811, highly  similar
            to Sorting nexin 9
          Length = 3573

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1712 acaagacaaacagaacatgg 1731

>gb|AF331667.1| Homo sapiens heat shock factor 2 (HSF2) gene, promoter sequence
          Length = 2651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 351  aagatatatgtatacctcttccaa 374
            |||||||||||||| |||||||||
Sbjct: 1490 aagatatatgtatatctcttccaa 1467

>gb|AF172847.1|AF172847 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds
          Length = 4175

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1737 acaagacaaacagaacatgg 1756

>gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, complete sequence
          Length = 148917

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ggggcaagatatatgtatac 365
              ||||||||||||||||||||
Sbjct: 137004 ggggcaagatatatgtatac 136985

>dbj|AB168588.1| Macaca fascicularis testis cDNA clone: QtsA-13248, similar to human
            sorting nexin 9 (SNX9), mRNA, RefSeq: NM_016224.3
          Length = 2020

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1692 acaagacaaacagaacatgg 1711

>gb|AF121859.1|AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds
          Length = 2271

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1617 acaagacaaacagaacatgg 1636

>gb|AY028171.1| Leishmania donovani extra chromosome XC290, partial sequence
          Length = 44273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gtgttgctgctgcgaagaaa 270
             ||||||||||||||||||||
Sbjct: 43345 gtgttgctgctgcgaagaaa 43364

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 355      tatatgtatacctcttccaa 374
                ||||||||||||||||||||
Sbjct: 17064494 tatatgtatacctcttccaa 17064513

>gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, complete sequence
          Length = 159748

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 31    aaggcaacaagacaaacagaacatgggt 58
             |||||||||| || ||||||||||||||
Sbjct: 64518 aaggcaacaacaccaacagaacatgggt 64545

>gb|AC021648.25| Homo sapiens 12 BAC RP11-255I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 128809

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tggaatgaagaaaccaaggg 342
             ||||||||||||||||||||
Sbjct: 99271 tggaatgaagaaaccaaggg 99290

>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0016H06
          Length = 148158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    tatatgtatacctcttccaa 374
              ||||||||||||||||||||
Sbjct: 143905 tatatgtatacctcttccaa 143924

>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   tatatgtatacctcttccaa 374
             ||||||||||||||||||||
Sbjct: 17620 tatatgtatacctcttccaa 17639

>gb|AY892413.1| Synthetic construct Homo sapiens clone FLH014894.01L sorting nexin 9
            (SNX9) mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612

>gb|AY892412.1| Synthetic construct Homo sapiens clone FLH014893.01L sorting nexin 9
            (SNX9) mRNA, partial cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1593 acaagacaaacagaacatgg 1612

>dbj|AK026637.1| Homo sapiens cDNA: FLJ22984 fis, clone KAT11574, highly similar to
            AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA
          Length = 1699

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1402 acaagacaaacagaacatgg 1421

>gb|AF131214.1|AF131214 Homo sapiens SH3 and PX domain-containing protein SH3PX1 (SH3PX1)
            mRNA, complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1636 acaagacaaacagaacatgg 1655

>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence
          Length = 200174

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   atcttcccttttcagctcct 413
             ||||||||||||||||||||
Sbjct: 34195 atcttcccttttcagctcct 34214

>gb|AF076957.1|AF076957 Homo sapiens SDP1 protein mRNA, complete cds
          Length = 1456

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 1077 acaagacaaacagaacatgg 1096

>dbj|AB209736.1| Homo sapiens mRNA for sorting nexin 9 variant protein
          Length = 7717

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   acaagacaaacagaacatgg 56
            ||||||||||||||||||||
Sbjct: 3690 acaagacaaacagaacatgg 3709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,888,454
Number of Sequences: 3902068
Number of extensions: 5888454
Number of successful extensions: 86809
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86742
Number of HSP's gapped (non-prelim): 67
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)