ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl38d02 |
|---|---|
| Clone Library Name | barley_pub |
>RPA2_RAT (O54888) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) (RNA polymerase I 127 kDa subunit) Length = 1135 Score = 47.8 bits (112), Expect = 6e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = -1 Query: 339 KNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDL 223 + + C C + ++TV++PYVFRY AELAAMNIK+ L Sbjct: 1094 RKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 47.4 bits (111), Expect = 8e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = -1 Query: 339 KNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDL 223 + + C C + ++TV++PYVFRY AELAAMNIK+ L Sbjct: 1094 RKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_PONPY (Q5REE8) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1136 Score = 47.4 bits (111), Expect = 8e-06 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = -1 Query: 339 KNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDL 223 + + C C + ++TV++PYVFRY AELAAMNIK+ L Sbjct: 1095 RKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1133
>RPA2_MOUSE (P70700) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 47.0 bits (110), Expect = 1e-05 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = -1 Query: 339 KNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDL 223 + + C C + ++TV++PYVFRY AELAAMNIK+ L Sbjct: 1094 RKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_EUPOC (P28365) DNA-directed RNA polymerase I second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1166 Score = 41.2 bits (95), Expect = 6e-04 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSN 211 C+ C+ N + VA+P+V R+LA ELA+M IKL +++ Sbjct: 1127 CKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVND 1165
>RPO2_MIMIV (Q7T6X7) DNA-directed RNA polymerase subunit 2 (EC 2.7.7.6)| Length = 1196 Score = 35.8 bits (81), Expect = 0.025 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -1 Query: 351 VKPTKNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMREAP 196 V K + C C+ + + +PY F+ L ELA++NI +R S P Sbjct: 1143 VPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINILGKIRTSKTIATP 1194
>RPA2_SCHPO (Q9P7X8) Probable DNA-directed RNA polymerase I polypeptide 2 (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1227 Score = 33.9 bits (76), Expect = 0.095 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -1 Query: 291 VAMPYVFRYLAAELAAMNIKLDLRL 217 +A+P VF YL AEL AMNIK+ L + Sbjct: 1202 IALPSVFNYLTAELTAMNIKMMLEV 1226
>RPA2_ASHGO (Q75DS1) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1198 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = -1 Query: 294 TVAMPYVFRYLAAELAAMNIKL 229 TVA+P+V +YL +ELAAM I+L Sbjct: 1170 TVAIPFVLKYLDSELAAMGIRL 1191
>RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 2) Length = 1137 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSN 211 C CQ++ + ++MPY + L EL +MN+ + L N Sbjct: 1098 CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILEN 1136
>RPB2_CAEEL (Q10578) DNA-directed RNA polymerase II second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1193 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 342 TKNFACQACQTNKGMETVAMPYVFRYLAAELAAMNI 235 T +F C+AC+ + V +PY + L EL +M+I Sbjct: 1138 TNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173
>RPB2_ENCCU (Q8SR75) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1141 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -1 Query: 363 GINTVKPTKNFACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLR 220 G+ + +K C+ C + V +PY F+ L EL MNI +R Sbjct: 1091 GLLAMGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIR 1138
>RPA2_YEAST (P22138) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (A135) (RNA polymerase I subunit 2) Length = 1203 Score = 31.2 bits (69), Expect = 0.62 Identities = 13/22 (59%), Positives = 19/22 (86%) Frame = -1 Query: 294 TVAMPYVFRYLAAELAAMNIKL 229 TVA+P+V +YL +EL+AM I+L Sbjct: 1175 TVAIPFVLKYLDSELSAMGIRL 1196
>LAC9_KLULA (P08657) Lactose regulatory protein LAC9| Length = 865 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 67 ILYNNTTHKISPL*TTSKNGTIDALFPIDTNQSL 168 IL NN TH +S + TTS + A+ P+ N S+ Sbjct: 344 ILNNNITHNVSDITTTSTSSNKRAMSPLSANDSV 377
>BVCP_NPVAC (P06545) DNA-binding protein (Arginine-rich protein 6.9 kDa) (Basic| viral core protein) (Nucleocapsid protein) Length = 54 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = -2 Query: 398 RTRRRNPSATCWASTR*NPPRTLRARPARQTKGWRRWRCRTSSG 267 R RRR+ + T + STR R RP R + +RR R R+S+G Sbjct: 3 RRRRRSSTGTTYGSTRRRRSSGYRRRPGR-PRTYRRSRSRSSTG 45
>PROP_CAVPO (Q64181) Properdin precursor (Factor P)| Length = 470 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Frame = +3 Query: 192 WEELLSCCSAGGPALCS*QPARLPDT*RRTASPPSPSLCLSGRPGTQSSWWVSPC----* 359 W LS C G P + +T RT S P PS G P +++ C Sbjct: 201 WSSCLSSCHGG--------PHKPVETRSRTCSAPEPSKNPPGNPCPGTAYEQQSCAGLPP 252 Query: 360 CPACGAW 380 CP G W Sbjct: 253 CPVAGGW 259
>RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1210 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 336 NFACQACQTNKGMETVAMPYVFRYLAAELAAMNI 235 ++ C++CQ V +PY + L EL +MNI Sbjct: 1167 SYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
>SYK_ENTFA (Q839A8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 29.6 bits (65), Expect = 1.8 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Frame = +1 Query: 85 THKISPL*TTSKNGTIDALFPIDTNQSLVYRL*FVAGRS---FSHVAQPE--VQLYVHSS 249 TH + L N T + L ++T S+ R+ G+ F+H+ E +Q+YV Sbjct: 41 THNSAELHEQYDNHTKEELSEMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKD 100 Query: 250 QLGCQIPEDVRHRHRLHPFVCLAGLARKVLGGFHRVDAQHVAL 378 Q+G + E +H L F + G K G V AQ + L Sbjct: 101 QVGDEAYELFKHAD-LGDFFGVTGQVMKTNTGEVTVKAQTITL 142
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 C C+++ + ++ +PY + L EL +MNI L+LS E Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKYNE 1133
>RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1176 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 Query: 333 FACQACQTNKGMETVAMPYVFRYLAAELAAMNI 235 F C+ C+ + V +PY + L EL +MNI Sbjct: 1137 FECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = -3 Query: 250 GCYEHKAG--PPAEQHERSSSQQRIIDGIPVIDSYLLEKEHLSSHFWMLFRGG 98 G HK+G PPA + + + DG+P L E LS + +FR G Sbjct: 69 GASRHKSGDDPPARRQGSEHTYESCGDGVPAPQKVLFPTERLSLRWERVFRVG 121
>NPFF2_MOUSE (Q924H0) Neuropeptide FF receptor 2 (Neuropeptide NPFF receptor)| (G-protein coupled receptor 74) Length = 417 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 138 SIYRPIFGCCLEGGDFVCCIVV*NRHSYFALYYYL 34 S Y IF C+ G VC IV+ NRH + +++ Sbjct: 50 SSYLLIFVLCMVGNTVVCFIVIRNRHMHTVTNFFI 84
>RPB2_ASHGO (Q753Q4) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1222 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -1 Query: 333 FACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 F C+ C+ + V +PY + L EL AMNI L R+ Sbjct: 1178 FECRGCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRLYTDRSRD 1221
>RPC2_SCHPO (Q10233) Putative DNA-directed RNA polymerase III 130 kDa polypeptide| (EC 2.7.7.6) (RNA polymerase III subunit 2) Length = 1165 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSN 211 C +CQ+ + + + +PY + L EL +MNI L L + Sbjct: 1123 CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALED 1161
>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC| 2.7.7.6) (C128) (RNA polymerase III subunit 2) Length = 1149 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNM 208 C C++ + + + +PY + L EL +MNI LRL ++ Sbjct: 1107 CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLEDI 1146
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 Query: 341 PRTLRARPARQTKGWRRWRCRTSSGIW 261 P A P GWR WR R S+ +W Sbjct: 412 PAPAPAPPEASPAGWRPWRFRMSNDVW 438
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -1 Query: 291 VAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 VA+P +YL ELAAM IKL ++ E Sbjct: 1187 VAVPGALKYLDVELAAMGIKLKYKVDKKDE 1216
>RPB2_CANGA (Q6FLD5) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1223 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -1 Query: 333 FACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 F C+ C + + +PY + L EL AMNI L R+ Sbjct: 1179 FECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRD 1222
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -1 Query: 333 FACQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 F C+ C + + +PY + L EL AMNI L R+ Sbjct: 1180 FECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRD 1223
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -1 Query: 327 CQACQTNKGMETVAMPYVFRYLAAELAAMNIKLDLRLSNMRE 202 C C+++ + ++ +PY + L EL +MNI L+L+ E Sbjct: 1092 CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKYNE 1133
>LUXS_ERWCT (Q6D1T5) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 171 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -3 Query: 301 DGDGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDGIPVID 158 +GDG + + + G R G Y G P EQ S + + D + V D Sbjct: 69 NGDGVEIIDISPMGCRTGFYMSLIGTPDEQRVAESWKAAMSDVLKVTD 116
>ACFD_VIBCH (Q9KTQ4) Accessory colonization factor AcfD precursor| Length = 1520 Score = 28.1 bits (61), Expect = 5.2 Identities = 25/90 (27%), Positives = 38/90 (42%) Frame = -3 Query: 352 GETHQELCVPGLPDKQRDGDGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDG 173 G H+ + P +P DG GG+A+ + G Y G P + S +DG Sbjct: 16 GCKHESIITPTVP---ADGSGGNALNPGLVGG----YLPDIGVP----DPIISLSMTLDG 64 Query: 172 IPVIDSYLLEKEHLSSHFWMLFRGGRFCVL 83 DS LL + +SHF + + FC + Sbjct: 65 NLKFDSSLLCNDQDASHFQISQKDNVFCTI 94
>LON3_CAEEL (Q23628) Cuticle collagen lon-3 precursor| Length = 324 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = -3 Query: 334 LCVPGLPDKQRDGDGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDGIPVID 158 L VPGLP G D + V + C GP E+ E+ Q +DG+P D Sbjct: 97 LPVPGLPFGPNVSGGSDRCQCTVENT---C---PTGPDGEEGEQGPDGQDGVDGVPGFD 149
>FOXP3_MOUSE (Q99JB6) Forkhead box protein P3 (Scurfin)| Length = 429 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 276 RTASPPSPSLCLSGRPGTQSSWWVSP 353 R A P +PSL L PG SW +P Sbjct: 5 RPAKPMAPSLALGPSPGVLPSWKTAP 30
>MTO1_MOUSE (Q923Z3) Protein MTO1 homolog, mitochondrial precursor| Length = 669 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -3 Query: 169 PVIDSYLLEKEHLSSHFWMLFRGGRFC 89 P +D+ +LE HL+SH +G R+C Sbjct: 288 PRVDAIVLENLHLNSHVQETTKGPRYC 314
>R1A_SOLDE (Q8W1E0) Late blight resistance protein R1-A (Protein R1)| Length = 1293 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = +3 Query: 36 DSSTRQSKNVYFIQQYNTQNLPPLNNIQKWDDRCSF------SNRYES 161 D T+ S VY +Q+ ++N+ +W CSF SN+Y+S Sbjct: 887 DQITKPSSCVYSHKQHAHLAFTEMHNLVEWSASCSFVGSVVLSNKYDS 934
>NFAE_ECOLI (P46738) Chaperone protein nfaE precursor| Length = 247 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Frame = -3 Query: 349 ETHQELCVPGLPDKQ-------RDGD-GGDAVRLQVSGSRAGCYEHKAGPPA 218 E+ Q +CV G+P K+ +DG+ D V L V S + C + PPA Sbjct: 126 ESRQWICVKGIPPKEDDRWAEGKDGEKKADKVSLNVQLSVSSCIKLFVRPPA 177
>LUXS_YERPS (Q66E63) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 171 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -3 Query: 301 DGDGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDGIPVID 158 +GDG + + + G R G Y G P EQ + + + D + V D Sbjct: 69 NGDGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVTD 116
>Y195_MYCPN (Q50292) Hypothetical protein MG181 homolog (GT9_orf434)| Length = 434 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 18 DFNYMSDSSTRQSKNVYF-IQQYNTQNLPPLNNIQKWDDRCSFSNRYESITGIPSM 182 +FN+ + S NV+ + +N N+ LN I + + +N Y +TGI + Sbjct: 110 NFNFWNISLFNYQDNVFSQVFNFNRANMTELNKINFFFKETANANAYTKVTGIDKL 165
>R1A10_SOLDE (Q60CZ8) Putative late blight resistance protein homolog R1A-10| Length = 1306 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 36 DSSTRQSKNVYFIQQYNTQNLPPLNNIQKWDDRCSF------SNRYE 158 D T+ S VY +Q+ ++N+ +W CSF SN+YE Sbjct: 869 DQITKPSSCVYSHKQHAHLAFTEMHNLVEWSASCSFVGSVVLSNKYE 915
>IL6RB_HUMAN (P40189) Interleukin-6 receptor beta chain precursor (IL-6R-beta)| (Interleukin 6 signal transducer) (Membrane glycoprotein 130) (gp130) (Oncostatin M receptor) (CD130 antigen) (CDw130) Length = 918 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/58 (22%), Positives = 26/58 (44%) Frame = -3 Query: 295 DGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDGIPVIDSYLLEKEHLSSH 122 DGGD + + + C +H++ P ERS + + + ++ K+ +S H Sbjct: 803 DGGDGILPRQQYFKQNCSQHESSPDISHFERSKQVSSVNE-----EDFVRLKQQISDH 855
>HELI_HCMVA (P16736) Probable ATP-dependent helicase UL105 (EC 3.6.1.-)| Length = 956 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 205 SHVAQPEVQ-LYVHSSQLGCQIPEDVRHRHRLHPFVCLAGLARKVLGGFHRVDAQHVALG 381 SHV+ + L ++S +P D RHR+HP V GL+R VL ALG Sbjct: 796 SHVSPAQTYTLEGYTSDNVLSLPSD---RHRIHPEVVQRGLSRLVL---------RDALG 843 Query: 382 FL 387 FL Sbjct: 844 FL 845
>FBX3_HUMAN (Q9UK99) F-box only protein 3| Length = 471 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 223 EVQLYVHSSQLGCQIPEDVRHRHRLH 300 E L +Q+GC++P+D R +R+H Sbjct: 124 EEDLDAVEAQIGCKLPDDYRCSYRIH 149
>R1A6_SOLDE (Q6L438) Putative late blight resistance protein homolog R1A-6| Length = 1247 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +3 Query: 36 DSSTRQSKNVYFIQQYNTQNLPPLNNIQKWDDRCSF------SNRYE 158 D T+ S VY +Q+ ++N+ +W CSF SN+YE Sbjct: 869 DQITKPSSCVYSHKQHAHLAFTEMHNLVEWSASCSFVGSVVLSNKYE 915
>FOXP3_MACFA (Q6U8D7) Forkhead box protein P3| Length = 431 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 276 RTASPPSPSLCLSGRPGTQSSWWVSP 353 R P +PSL L PG SW +P Sbjct: 5 RPGKPSAPSLALGPSPGASPSWRAAP 30
>FOXP3_HUMAN (Q9BZS1) Forkhead box protein P3 (Scurfin)| Length = 431 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 276 RTASPPSPSLCLSGRPGTQSSWWVSP 353 R P +PSL L PG SW +P Sbjct: 5 RPGKPSAPSLALGPSPGASPSWRAAP 30
>LTK_HUMAN (P29376) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)| (Protein tyrosine kinase 1) Length = 864 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 17/73 (23%) Frame = +3 Query: 189 CWEELLSCCSAGGPALCS*QPARLPDT*R--------------RTASPPS---PSLCLSG 317 CW +LL A G LCS P R + ++PPS P+ L+ Sbjct: 3 CWGQLLVWFGAAGAILCS-SPGSQETFLRSSPLPLASPSPQDPKVSAPPSILEPASPLNS 61 Query: 318 RPGTQSSWWVSPC 356 PGT+ SW S C Sbjct: 62 -PGTEGSWLFSTC 73
>Y008_DEHE1 (Q3ZAI6) UPF0078 membrane protein DET0008| Length = 208 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 281 GIATVSIPLFVWQAWHAKFLVGFTVLMPSMWRLDF 385 GIA S+P VW H++F +VL+ M + F Sbjct: 145 GIALFSLPFLVWYGSHSEFATLISVLLFLMIGIKF 179
>METN_ECOLI (P30750) D-methionine transport ATP-binding protein metN| Length = 343 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 202 FSHVAQPEVQLYVHSSQLGCQIPEDVRHRHRLHPFVCLAGLARKVLGGFHRVDA 363 FSH P Q ++ S+ L IPED + R + PF + R G VDA Sbjct: 229 FSHPKTPLAQKFIQST-LHLDIPEDYQERLQAEPFTDCVPMLRLEFTG-QSVDA 280
>METN_ECOL6 (P63355) D-methionine transport ATP-binding protein metN| Length = 343 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 202 FSHVAQPEVQLYVHSSQLGCQIPEDVRHRHRLHPFVCLAGLARKVLGGFHRVDA 363 FSH P Q ++ S+ L IPED + R + PF + R G VDA Sbjct: 229 FSHPKTPLAQKFIQST-LHLDIPEDYQERLQAEPFTDCVPMLRLEFTG-QSVDA 280
>METN_ECO57 (P63356) D-methionine transport ATP-binding protein metN| Length = 343 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 202 FSHVAQPEVQLYVHSSQLGCQIPEDVRHRHRLHPFVCLAGLARKVLGGFHRVDA 363 FSH P Q ++ S+ L IPED + R + PF + R G VDA Sbjct: 229 FSHPKTPLAQKFIQST-LHLDIPEDYQERLQAEPFTDCVPMLRLEFTG-QSVDA 280
>FBX3_MOUSE (Q9DC63) F-box only protein 3| Length = 480 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 223 EVQLYVHSSQLGCQIPEDVRHRHRLH 300 E L +Q+GC++P+D R +R+H Sbjct: 124 EEDLDAVEAQIGCKLPDDYRCSYRIH 149
>LUXS_YERPE (Q8ZBU3) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 170 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -3 Query: 301 DGDGGDAVRLQVSGSRAGCYEHKAGPPAEQHERSSSQQRIIDGIPVID 158 +GDG + + + G R G Y G P EQ + + + D + V D Sbjct: 68 NGDGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVTD 115
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 27.3 bits (59), Expect = 8.9 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = +3 Query: 75 QQYNTQNLPPLNNIQKWDDRCSFSNRYESITGIPSMIRCWEELLSCCSAGGPALCS*QPA 254 Q+ T ++ L N++ + R + R + G+P +C +E +C + GPA S QPA Sbjct: 155 QRVQTSSVAALGNVKPFRTR---AGRVQ--WGVP---QCAQEA-ACGRSSGPAKDSGQPA 205 Query: 255 ---RLPDT*RRTASPPSPS 302 R PD A+PP PS Sbjct: 206 EPDRTPD-----AAPPDPS 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,845,896 Number of Sequences: 219361 Number of extensions: 1387397 Number of successful extensions: 4106 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 3970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4101 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
