ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-) 35 0.058
2TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) ... 31 0.84
3MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 29 2.4
4CB024_RAT (Q6P7B2) Protein C2orf24 homolog 28 4.1
5ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 5.4
6Y1742_STRPN (Q97P99) UPF0348 protein SP1742 28 5.4
7Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587 28 5.4
8ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 5.4
9OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle... 28 5.4
10YBIB_ECOLI (P30177) Hypothetical protein ybiB 28 7.1
11ITPK1_BOVIN (P0C0T1) Inositol-tetrakisphosphate 1-kinase (EC 2.7... 28 7.1
12TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA ... 28 7.1
13END3_YEAST (P39013) Protein END3 27 9.2
14PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4... 27 9.2
15IF2_PORGI (Q7MXE4) Translation initiation factor IF-2 27 9.2
16PCDH8_HUMAN (O95206) Protocadherin-8 precursor (Arcadlin) 27 9.2

>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)|
          Length = 915

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 340 GEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 233
           G ED  E E + V +EV GLE+ +GK F M+W M I
Sbjct: 881 GLED--EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914



to top

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 264 FPSGNSSPPTSIVTPLFSPSTASSSPWCITCASAA 368
           FPSG+  PP  + +PL   S  S +P   +C+SA+
Sbjct: 263 FPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSAS 297



to top

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 3   RMQFHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 122
           R  F  P  LS         WCSR+T+P++++    S +N
Sbjct: 602 RNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641



to top

>CB024_RAT (Q6P7B2) Protein C2orf24 homolog|
          Length = 408

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 198 AEANAARFSYASMCMFHVMVKLFPSGNSSPPTSIVTP--LFSPSTASSSPWCITCASA 365
           A  ++   + ASM + H  + L  S + SPP   + P  L  P   +  P C+T  S+
Sbjct: 238 AYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKNLLQPCIPAPVPQCLTNVSS 295



to top

>ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 414

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
 Frame = +2

Query: 5   NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLYKFKLDT 157
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++      
Sbjct: 148 NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESY 207

Query: 158 TTTSR-TKKAHADGSRGKCSSILLCFDVHVPRHGEALPQ 271
           T   R + K  + G+  + S      +V  P     L +
Sbjct: 208 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTE 246



to top

>Y1742_STRPN (Q97P99) UPF0348 protein SP1742|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 97
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



to top

>Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 97
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



to top

>ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 419

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
 Frame = +2

Query: 5   NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLYKFKLDT 157
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++      
Sbjct: 148 NGLAFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESY 207

Query: 158 TTTSR-TKKAHADGSRGKCSSILLCFDVHVPRHGEALPQ 271
           T   R + K  + G+  + S      +V  P     L +
Sbjct: 208 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTE 246



to top

>OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle 2)|
           (Orthodenticle-A-like protein)
          Length = 288

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 SGNSSPPTSIVTPLFSPSTASSSPW 344
           SG  SPP+S   P+ S STA  S W
Sbjct: 128 SGQFSPPSSTSVPVISSSTAPVSIW 152



to top

>YBIB_ECOLI (P30177) Hypothetical protein ybiB|
          Length = 320

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 349 MHQGEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 233
           +H G+  A   E + V M VG    PL K   M W M +
Sbjct: 139 LHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGV 177



to top

>ITPK1_BOVIN (P0C0T1) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)|
           (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-)
           (Inositol 1,3,4-trisphosphate 5/6-kinase)
          Length = 419

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +2

Query: 5   NAVSFP--CKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 139
           N ++FP  CKT +     S +M    NQ       PP  + N + H+ +L+K++
Sbjct: 148 NGLAFPFICKTRVAHGTNSHEMAIVFNQEGLSAIQPPCVVQNFINHNAVLYKVF 201



to top

>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 189 QTEAEANAARFSYASM-CMFHVMVKLFPSGNSSPPTSIVTPLFSPSTASSSP 341
           Q +A+A A   + A +       V+    G S+P TS   P  S ST+SS+P
Sbjct: 228 QAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTP 279



to top

>END3_YEAST (P39013) Protein END3|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 65  VFEGNQPPHKLHNRLKHDELLFKLYKFKLDTTTTSR 172
           +F G +P   + N++ HD++L  LY  KLD++  ++
Sbjct: 15  IFSGLKP---IENKVNHDQVLPILYNSKLDSSVLNK 47



to top

>PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4 precursor|
           (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC
           3) (Prohormone convertase 3) (KEX2-like endoprotease 3)
          Length = 678

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 261 LFPS---GNSSPPTSIVTPLFSPSTASSSPWCITC 356
           LFP+   G++S P   ++PL +    S  PWC  C
Sbjct: 644 LFPAPHAGSASEPLQGLSPLAAILAISLGPWCCPC 678



to top

>IF2_PORGI (Q7MXE4) Translation initiation factor IF-2|
          Length = 979

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 331 DAVEGEKRGVTMEVG--GLELPLGKSFT 254
           + +EGE  G+T  +G  GL+LP G+  T
Sbjct: 504 NVIEGEAGGITQHIGAYGLKLPSGRRIT 531



to top

>PCDH8_HUMAN (O95206) Protocadherin-8 precursor (Arcadlin)|
          Length = 1070

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 NSSPPTSIVTPLFSPSTASSSPWCITCASAA 368
           N + P   +TPL +P   ++SP+    A+AA
Sbjct: 348 NDNAPDIAITPLAAPGAPATSPFAAAAAAAA 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,037,387
Number of Sequences: 219361
Number of extensions: 714787
Number of successful extensions: 2852
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2848
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top