ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YLB5_CAEEL (P46580) Hypothetical protein C34E10.5 in chromosome III 31 1.7
2GLSK_HUMAN (O94925) Glutaminase kidney isoform, mitochondrial pr... 31 1.7
3GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial prec... 30 2.9
4IRK14_RAT (O70596) ATP-sensitive inward rectifier potassium chan... 29 6.6
5IRK14_MOUSE (Q8JZN3) ATP-sensitive inward rectifier potassium ch... 29 6.6
6VD05_VARV (P33069) Protein D5 28 8.6

>YLB5_CAEEL (P46580) Hypothetical protein C34E10.5 in chromosome III|
          Length = 734

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 348 SYVRPLPSCALEIETGMPLVTSSCPILTAFLPLHGH-TPEYKSDHMKCVKHFTQRHLRPN 172
           SYV+P+ S  +       +   S P L+  +P HG   PE   D M  ++ + Q H+R N
Sbjct: 534 SYVKPIMSTHIH----QTIKAQSIPYLSRAIPSHGRGEPELDEDEM-WIQKYPQGHVRNN 588

Query: 171 TD 166
            D
Sbjct: 589 MD 590



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>GLSK_HUMAN (O94925) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase)
          Length = 669

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 400 WEKAKKGGGDKLIMLPPQLRSSTPFL-----CAGDRNRHAPGDLVMP 275
           +E AKK  G K+    PQL   +P L     C  D  RH+ GD  +P
Sbjct: 235 YESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVP 281



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>GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase) [Contains: Glutaminase kidney isoform 68
           kDa chain; Glutaminase kidney isoform 65 kDa chain]
          Length = 674

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 400 WEKAKKGGGDKLIMLPPQLRSSTPFL-----CAGDRNRHAPGDLVMP 275
           +E AKK  G K+    PQL   +P L     C  D  RH+ GD  +P
Sbjct: 240 YESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVP 286



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>IRK14_RAT (O70596) ATP-sensitive inward rectifier potassium channel 14|
           (Potassium channel, inwardly rectifying subfamily J
           member 14) (Inward rectifier K(+) channel Kir2.4) (IRK4)
          Length = 434

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 375 PPPFFAFSQLPTFKSAFLFLEESQ 446
           PPP   FSQ+ +F +AFLF  E+Q
Sbjct: 120 PPPAPCFSQVASFLAAFLFALETQ 143



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>IRK14_MOUSE (Q8JZN3) ATP-sensitive inward rectifier potassium channel 14|
           (Potassium channel, inwardly rectifying subfamily J
           member 14) (Inward rectifier K(+) channel Kir2.4) (IRK4)
          Length = 434

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 375 PPPFFAFSQLPTFKSAFLFLEESQ 446
           PPP   FSQ+ +F +AFLF  E+Q
Sbjct: 120 PPPAPCFSQVASFLAAFLFALETQ 143



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>VD05_VARV (P33069) Protein D5|
          Length = 785

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 48  NQEENNNKIASCAKLDYYYYCSTLEQLYS*VQ*T*HLHPHQYLVEDDAV*SVSRISYDHS 227
           N  + NN       +DY   C+  ++         H HPHQ  +E+DA+  + +    HS
Sbjct: 262 NDLDENNFTTVPLVIDYVTPCALCKKRS-------HKHPHQLSLENDAI-RIYKTGNPHS 313

Query: 228 C----IPVCGHEV 254
           C    +P+ G+++
Sbjct: 314 CKVKIVPLDGNKL 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,319,209
Number of Sequences: 219361
Number of extensions: 1363238
Number of successful extensions: 2919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2919
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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