>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3,
             complete sequence
          Length = 147441

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    tcacttgtataagtgcagcaa 88
             |||||||||||||||||||||
Sbjct: 38883 tcacttgtataagtgcagcaa 38863

>gb|AY795578.1| Sterculia stipulata NADH dehydrogenase (ndhF) gene, partial cds;
          chloroplast
          Length = 2117

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 20 tattaaaatatgaatgggaa 39
          ||||||||||||||||||||
Sbjct: 55 tattaaaatatgaatgggaa 36

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      tttttattaaaatatgaatg 35
               ||||||||||||||||||||
Sbjct: 3545607 tttttattaaaatatgaatg 3545588

>gb|AC121924.3| Mus musculus BAC clone RP24-198P16 from chromosome 2, complete sequence
          Length = 177062

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     ccatctttttattaaaatatgaat 34
              ||||||||| ||||||||||||||
Sbjct: 121691 ccatcttttaattaaaatatgaat 121714

>gb|AC127333.3| Mus musculus BAC clone RP23-137F10 from 7, complete sequence
          Length = 185795

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    taaaatatgaatgggaaagcaaat 46
             ||||| ||||||||||||||||||
Sbjct: 42363 taaaacatgaatgggaaagcaaat 42386

>emb|BX530056.17| Zebrafish DNA sequence from clone CH211-208I16 in linkage group 18,
              complete sequence
          Length = 235804

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tttttattaaaatatgaatg 35
              ||||||||||||||||||||
Sbjct: 184432 tttttattaaaatatgaatg 184413

>emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chromosome 6, complete
             sequence
          Length = 149849

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    catctttttattaaaatatg 31
             ||||||||||||||||||||
Sbjct: 86021 catctttttattaaaatatg 86040

>emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in linkage group 9,
             complete sequence
          Length = 176022

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    ctttttattaaaatatgaat 34
             ||||||||||||||||||||
Sbjct: 32673 ctttttattaaaatatgaat 32692

>emb|BX276111.12| Zebrafish DNA sequence from clone CH211-258H7 in linkage group 13,
              complete sequence
          Length = 195980

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 12     catctttttattaaaatatgaatg 35
              |||||||||||||||| |||||||
Sbjct: 169188 catctttttattaaaaaatgaatg 169211

>gb|AC093848.2| Homo sapiens BAC clone RP11-486G21 from 4, complete sequence
          Length = 175064

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tatgaatgggaaagcaaata 47
             ||||||||||||||||||||
Sbjct: 96586 tatgaatgggaaagcaaata 96567

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      tttttattaaaatatgaatg 35
               ||||||||||||||||||||
Sbjct: 3545718 tttttattaaaatatgaatg 3545699

>emb|BX649631.8| Zebrafish DNA sequence from clone CH211-186M12 in linkage group 22,
             complete sequence
          Length = 168355

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ccatctttttattaaaatat 30
             ||||||||||||||||||||
Sbjct: 14712 ccatctttttattaaaatat 14731

>ref|XM_577311.1| PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S3a
           (V-fos transformation effector protein) (LOC364115),
           mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 23  taaaatatgaatgggaaagcaaatacaaaagg 54
           ||||||||| || ||||||||||| |||||||
Sbjct: 681 taaaatatgtattggaaagcaaattcaaaagg 712

>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tttttattaaaatatgaatg 35
             ||||||||||||||||||||
Sbjct: 63260 tttttattaaaatatgaatg 63241

>gb|AY261361.1| African swine fever virus isolate Malawi Lil-20/1 (1983), complete genome
          Length = 187612

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     ttttattaaaatatgaatgggaaa 40
              ||||||||||||||||||| ||||
Sbjct: 115714 ttttattaaaatatgaatgagaaa 115737

>emb|AL929249.15| Mouse DNA sequence from clone RP23-273G23 on chromosome 2, complete
              sequence
          Length = 194209

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     ccatctttttattaaaatatgaat 34
              ||||||||| ||||||||||||||
Sbjct: 106967 ccatcttttaattaaaatatgaat 106944

>emb|AL954771.5| Zebrafish DNA sequence from clone CH211-220B15 in linkage group 21,
              complete sequence
          Length = 197721

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tttttattaaaatatgaatg 35
              ||||||||||||||||||||
Sbjct: 103013 tttttattaaaatatgaatg 102994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,713,826
Number of Sequences: 3902068
Number of extensions: 2713826
Number of successful extensions: 60583
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60491
Number of HSP's gapped (non-prelim): 92
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)