ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl38c09 |
|---|---|
| Clone Library Name | barley_pub |
>CTPC_MYCTU (P0A502) Probable cation-transporting P-type ATPase C (EC 3.6.3.-)| (Metal-transporting ATPase Mta72) Length = 718 Score = 31.6 bits (70), Expect = 0.76 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = -1 Query: 337 VLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDEN 206 VLT+L + R V L GD+ EI+QV A +L D + M E+ Sbjct: 547 VLTKLRANGIRRIVMLTGDHPEIAQVVADELGIDEWRAEVMPED 590
>CTPC_MYCBO (P0A503) Probable cation-transporting P-type ATPase C (EC 3.6.3.-)| (Metal-transporting ATPase Mta72) Length = 718 Score = 31.6 bits (70), Expect = 0.76 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = -1 Query: 337 VLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDEN 206 VLT+L + R V L GD+ EI+QV A +L D + M E+ Sbjct: 547 VLTKLRANGIRRIVMLTGDHPEIAQVVADELGIDEWRAEVMPED 590
>DPOL2_AERPE (O93746) DNA polymerase 2 (EC 2.7.7.7) (DNA polymerase II)| Length = 784 Score = 31.2 bits (69), Expect = 0.99 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = -1 Query: 358 ELKSLLVVLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDENAHTLEHYTK 179 E K V LT GK DV + GD E+++ K+AE + T +DE + + + Sbjct: 603 EAKKRYVGLTVDGKIDVVGFEAVRGDWSELAKETQFKVAEIVLKTGSVDEAVDYVRNIIE 662 Query: 178 MLRAHQPAAGETSSWR 131 LR Q + W+ Sbjct: 663 KLRRGQVDMRKLVIWK 678
>CBIO1_STRA5 (Q8DWR4) Cobalt import ATP-binding protein cbiO 1| Length = 280 Score = 30.8 bits (68), Expect = 1.3 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -1 Query: 331 TQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTM-----STDKMDENAHTL 194 +QL +E V + V NF ISQ+ A +LAE+ + S D D+N L Sbjct: 96 SQLFEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFEL 146
>CBIO1_STRA3 (Q8E2L3) Cobalt import ATP-binding protein cbiO 1| Length = 280 Score = 30.8 bits (68), Expect = 1.3 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -1 Query: 331 TQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTM-----STDKMDENAHTL 194 +QL +E V + V NF ISQ+ A +LAE+ + S D D+N L Sbjct: 96 SQLFEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFEL 146
>Y1480_CORDI (Q6NGM9) UPF0090 protein DIP1480| Length = 184 Score = 30.0 bits (66), Expect = 2.2 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = -1 Query: 370 GAQKELKSLLVVLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMD 212 GA + ++ ++V+ + GK+ V R VQLA + + ++ K AED ++ ++ Sbjct: 120 GALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALE 172
>RS6_WIGBR (Q8D2U2) 30S ribosomal protein S6| Length = 113 Score = 30.0 bits (66), Expect = 2.2 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = -1 Query: 226 TDKMDENAHTLEHYTKMLRAHQPAAGETSSWRIKALS 116 TD+ D+ ++ +EHYTKM++ ++ + W + L+ Sbjct: 12 TDQSDQISNIIEHYTKMIKINKGSIHRLEDWGRRQLA 48
>HBB_BOVIN (P02070) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 145 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 197 GMRILVHLVGRHCILGQLHCSHLRYFKIVPSELHLTGDIFFPQLC*NYKQAFKLLLRSSG 376 GM+ L L G L +LHC L + P L G++ L N+ + F +L++ Sbjct: 73 GMKHLDDLKGTFAALSELHCDKLH---VDPENFKLLGNVLVVVLARNFGKEFTPVLQADF 129 Query: 377 QR 382 Q+ Sbjct: 130 QK 131
>HBBA_BOSJA (P04346) Hemoglobin beta-A subunit (Hemoglobin beta-A chain)| (Beta-A-globin) Length = 145 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 197 GMRILVHLVGRHCILGQLHCSHLRYFKIVPSELHLTGDIFFPQLC*NYKQAFKLLLRSSG 376 GM+ L L G L +LHC L + P L G++ L N+ + F +L++ Sbjct: 73 GMKHLDDLKGTFAALSELHCDKLH---VDPENFKLLGNVLVVVLARNFGKEFTPVLQADF 129 Query: 377 QR 382 Q+ Sbjct: 130 QK 131
>DNAK_THETN (Q8RB68) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 606 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/81 (25%), Positives = 37/81 (45%) Frame = -1 Query: 382 SLATGAQKELKSLLVVLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDENA 203 SL A+K +K L +TQ K+++ ++++ E + V A+K A + +S Sbjct: 512 SLIYQAEKTMKDLGDKMTQAEKDEINKEIENVRKALEGTDVEAIKAASEKLSE------- 564 Query: 202 HTLEHYTKMLRAHQPAAGETS 140 Y R +Q AAG + Sbjct: 565 ---AFYKVSTRLYQQAAGSAN 582
>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor| Length = 263 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 213 SILSVDIVSSANFT-AATCDISKLSPASCT*RATSSFPSCVRTTSRLLSSFCAPVARDIP 389 S+ S+ ++S A+ C SP C ++ P+C TT+ ++ CAP R P Sbjct: 8 SLASILLLSVAHVAQGCDCGCPTTSPKPCQ----TTVPTCAPTTTTTTTTTCAPPTRPPP 63 Query: 390 LRCS 401 C+ Sbjct: 64 PPCT 67
>RLUB_YERPE (Q8ZEG0) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 318 Score = 28.9 bits (63), Expect = 4.9 Identities = 16/64 (25%), Positives = 34/64 (53%) Frame = -1 Query: 370 GAQKELKSLLVVLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDENAHTLE 191 G+++E+++++ Q G+ V +V GD E++Q ++L +S + +EN + Sbjct: 15 GSRREIEAII----QQGRVSVDGKVSKLGDRVEVTQSTKIRLDGHLLSIKESEENVCRVL 70 Query: 190 HYTK 179 Y K Sbjct: 71 AYYK 74
>ADA_BOVIN (P56658) Adenosine deaminase (EC 3.5.4.4) (Adenosine| aminohydrolase) Length = 362 Score = 28.9 bits (63), Expect = 4.9 Identities = 25/85 (29%), Positives = 35/85 (41%) Frame = -1 Query: 415 EMALVEHLKGMSLATGAQKELKSLLVVLTQLGKEDVARQVQLAGDNFEISQVAAVKLAED 236 ++A E ++G SL G K + K V R V E+ VK A D Sbjct: 180 DLAGDETIEGSSLFPGHVKAYAEAV-------KSGVHRTVHAG----EVGSANVVKEAVD 228 Query: 235 TMSTDKMDENAHTLEHYTKMLRAHQ 161 T+ T+++ HTLE T R Q Sbjct: 229 TLKTERLGHGYHTLEDATLYNRLRQ 253
>CTPC_MYCLE (Q9CCL1) Probable cation-transporting P-type ATPase C (EC 3.6.3.-)| Length = 725 Score = 28.9 bits (63), Expect = 4.9 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -1 Query: 337 VLTQLGKEDVARQVQLAGDNFEISQVAAVKLAEDTMSTDKMDEN 206 VLT+L V R V L GD+ +I++ A +L D + M E+ Sbjct: 555 VLTKLRASGVRRIVMLTGDHPDIAKAVATELGIDEWRAEVMPED 598
>OAZ1_HUMAN (P54368) Ornithine decarboxylase antizyme (ODC-Az)| Length = 227 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 41 TSIISFQNRVTNLQSGNWRTYQSRRRQSFDSPGGGFACG 157 T I++ Q+R+T+ + NWRT S + PGG G Sbjct: 112 TRILNVQSRLTDAKRINWRTVLSGGSLYIEIPGGALPEG 150
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +1 Query: 241 RPTSLQPPAIFQNCPQRAAPDGRHLLSPAVLELQAGF*APFALQWPETSP*DAPQVPS 414 +P S+ PP + + P A P G H + P V + A AP ++ T+ P VP+ Sbjct: 477 QPQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAP-SVPSVSTTSVTMPNVPA 533
>PSPN_RAT (O70301) Persephin precursor (PSP)| Length = 156 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 193 QGYAHSRPSCR*TLYPRPTSLQPPAIFQNCPQRAA 297 QG AH RP C+ T Y T L +Q PQ +A Sbjct: 115 QGRAHGRPCCQPTSYADVTFLDDHHHWQQLPQLSA 149
>HPS6_MOUSE (Q8BLY7) Hermansky-Pudlak syndrome 6 protein homolog (Ruby-eye| protein) (Ru) Length = 805 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = +1 Query: 262 PAIFQNCPQRAAPDGRHLL--------SPAVLELQAGF*APFALQWPETSP 390 PA+ C +PDGRHLL +P +L G P WPE P Sbjct: 30 PAVLVRC----SPDGRHLLLLRPPGSPAPQLLVAVRGPGLPLERAWPEGDP 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,424,015 Number of Sequences: 219361 Number of extensions: 1277406 Number of successful extensions: 3559 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3557 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
