ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
2dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
3ref|XM_450977.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
4dbj|AK060211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5ref|XM_450981.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
6dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
7dbj|AK111541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8emb|BX324111.12| Zebrafish DNA sequence from clone CH211-119C17 ... 46 0.10
9emb|CR925821.12| Zebrafish DNA sequence from clone DKEY-27D1 in ... 46 0.10
10gb|AC146774.7| Medicago truncatula clone mth2-91k24, complete se... 46 0.10
11gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, com... 46 0.10
12gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, co... 44 0.41
13ref|NM_194032.1| Oryza sativa (japonica cultivar-group), predic... 44 0.41
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
16dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
17dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
18dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
19dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
20gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, comp... 42 1.6
21gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, co... 42 1.6
22dbj|AK134170.1| Mus musculus adult male thymus cDNA, RIKEN full-... 42 1.6
23gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, co... 42 1.6
24emb|BX005348.9| Zebrafish DNA sequence from clone DKEY-245J21 in... 42 1.6
25emb|BX323548.11| Zebrafish DNA sequence from clone DKEY-31D5 in ... 42 1.6
26dbj|AK043438.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 1.6
27dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28dbj|AK119296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
29emb|AL928827.10| Zebrafish DNA sequence from clone DKEY-284M18 i... 42 1.6
30emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chro... 42 1.6
31gb|AC154130.1| Tribolium castaneum BAC T.cast_C11O3 (Clemson Un... 40 6.4
32gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome... 40 6.4
33gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, c... 40 6.4
34gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, co... 40 6.4
35gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete... 40 6.4
36gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8... 40 6.4
37gb|AC073308.4| Homo sapiens BAC clone RP11-13M3 from 7, complete... 40 6.4
38gb|AC134328.2| Mus musculus BAC clone RP24-299H18 from chromosom... 40 6.4
39gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosom... 40 6.4
40gb|AC122186.2| Mus musculus BAC clone RP23-19M20 from 1, complet... 40 6.4
41gb|AC121607.2| Mus musculus BAC clone RP23-314P9 from 1, complet... 40 6.4
42gb|AC087883.12| Homo sapiens 12q BAC RP11-335M9 (Roswell Park Ca... 40 6.4
43gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho... 40 6.4
44emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
45emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, c... 40 6.4
46gb|AC006194.4| Arabidopsis thaliana chromosome 2 clone T17A11 ma... 40 6.4
47ref|NM_132934.2| Drosophila melanogaster CG4756-RA (CG4756), mRNA 40 6.4
48gb|AY071452.1| Drosophila melanogaster RE53486 full length cDNA 40 6.4
49emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 ... 40 6.4
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
51gb|AC022350.2|AC022350 Drosophila melanogaster, chromosome X, re... 40 6.4
52gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome ... 40 6.4
53gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.4
54gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Canc... 40 6.4
55emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chro... 40 6.4
56gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 6.4
57gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 ... 40 6.4
58emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in ... 40 6.4
59emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chr... 40 6.4
60gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from ch... 40 6.4

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 110/131 (83%)
 Strand = Plus / Plus

                                                                            
Query: 193      tccccaagtaggcattccatctcttcagggttccgctgcacccatggatgttgcatcacc 252
                |||||||||| ||  |||||||||||||| ||  | ||  |||||||||||||||| |||
Sbjct: 17895376 tccccaagtaagctctccatctcttcaggattttgttgtgcccatggatgttgcattacc 17895435

                                                                            
Query: 253      ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctattgtcaccacac 312
                |||||||  ||||| |||||||| ||||||||||||||| | || ||||| |||||| ||
Sbjct: 17895436 ttcctcaacctatcgagcttgtctgcaacttccttcatcaacggtctattctcaccagac 17895495

                           
Query: 313      atctctaagca 323
                || || |||||
Sbjct: 17895496 atttccaagca 17895506



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 149/184 (80%)
 Strand = Plus / Plus

                                                                            
Query: 233      cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
                |||| ||||| ||||  ||||| ||||  ||||||||||| || |||||||||||||| |
Sbjct: 17906930 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 17906989

                                                                            
Query: 293      atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352
                |||||||||| ||||||||||| || ||||| ||  | || | ||| ||   ||||||||
Sbjct: 17906990 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 17907049

                                                                            
Query: 353      taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412
                 ||| ||  |  |||||||| |||| || | |||||||||||||||||||||||| ||| 
Sbjct: 17907050 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 17907109

                    
Query: 413      cctt 416
                ||||
Sbjct: 17907110 cctt 17907113



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                            
Query: 234      ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293
                |||||| |||||||| |||||  |||  ||||| ||||| ||||||||||||||||| ||
Sbjct: 17922204 ccatgggtgttgcattaccttaatcaacctatcgagcttctccgcaacttccttcatgga 17922263

                                     
Query: 294      tggcctattgtcaccacacat 314
                ||| ||||  |||||||||||
Sbjct: 17922264 tggtctatcctcaccacacat 17922284



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                            
Query: 233      cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
                |||||||||||||||| ||||| ||||| || ||||| || || ||||  | |||||| |
Sbjct: 17948171 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 17948230

                                               
Query: 293      atggcctattgtcaccacacatctctaagca 323
                ||||||||||  ||||| ||||||| |||||
Sbjct: 17948231 atggcctattcacaccagacatctccaagca 17948261



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                            
Query: 234      ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293
                |||||| |||||||| |||||   ||| ||||| ||||| |||||||||| |||||| ||
Sbjct: 17914114 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 17914173

                                     
Query: 294      tggcctattgtcaccacacat 314
                ||| ||||  |||||||||||
Sbjct: 17914174 tggtctatcctcaccacacat 17914194



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 253      ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301
                |||||||| ||||||||||| ||    ||||||||||| ||||||||||
Sbjct: 17932948 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 17932996



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 131      ctttcttctcgatgctgaaat 151
                |||||||||||||||||||||
Sbjct: 17922101 ctttcttctcgatgctgaaat 17922121



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 131      ctttcttctcgatgctgaaat 151
                |||||||||||||||||||||
Sbjct: 17914011 ctttcttctcgatgctgaaat 17914031



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                         
Query: 384      atcatccaagatttcctcaagcttattcaccttcatcgcatacataaacatcatcga 440
                ||||| ||| || ||||| ||||| ||| ||||||||||| | | ||||||||||||
Sbjct: 12441100 atcattcaacatatcctcgagcttgttctccttcatcgcagagagaaacatcatcga 12441156



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>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_B06
          Length = 106678

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 110/131 (83%)
 Strand = Plus / Plus

                                                                         
Query: 193   tccccaagtaggcattccatctcttcagggttccgctgcacccatggatgttgcatcacc 252
             |||||||||| ||  |||||||||||||| ||  | ||  |||||||||||||||| |||
Sbjct: 46195 tccccaagtaagctctccatctcttcaggattttgttgtgcccatggatgttgcattacc 46254

                                                                         
Query: 253   ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctattgtcaccacac 312
             |||||||  ||||| |||||||| ||||||||||||||| | || ||||| |||||| ||
Sbjct: 46255 ttcctcaacctatcgagcttgtctgcaacttccttcatcaacggtctattctcaccagac 46314

                        
Query: 313   atctctaagca 323
             || || |||||
Sbjct: 46315 atttccaagca 46325



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 149/184 (80%)
 Strand = Plus / Plus

                                                                         
Query: 233   cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
             |||| ||||| ||||  ||||| ||||  ||||||||||| || |||||||||||||| |
Sbjct: 57749 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 57808

                                                                         
Query: 293   atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352
             |||||||||| ||||||||||| || ||||| ||  | || | ||| ||   ||||||||
Sbjct: 57809 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 57868

                                                                         
Query: 353   taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412
              ||| ||  |  |||||||| |||| || | |||||||||||||||||||||||| ||| 
Sbjct: 57869 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 57928

                 
Query: 413   cctt 416
             ||||
Sbjct: 57929 cctt 57932



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                         
Query: 234   ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293
             |||||| |||||||| |||||  |||  ||||| ||||| ||||||||||||||||| ||
Sbjct: 73023 ccatgggtgttgcattaccttaatcaacctatcgagcttctccgcaacttccttcatgga 73082

                                  
Query: 294   tggcctattgtcaccacacat 314
             ||| ||||  |||||||||||
Sbjct: 73083 tggtctatcctcaccacacat 73103



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                         
Query: 233   cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
             |||||||||||||||| ||||| ||||| || ||||| || || ||||  | |||||| |
Sbjct: 98990 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 99049

                                            
Query: 293   atggcctattgtcaccacacatctctaagca 323
             ||||||||||  ||||| ||||||| |||||
Sbjct: 99050 atggcctattcacaccagacatctccaagca 99080



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                         
Query: 234   ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293
             |||||| |||||||| |||||   ||| ||||| ||||| |||||||||| |||||| ||
Sbjct: 64933 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 64992

                                  
Query: 294   tggcctattgtcaccacacat 314
             ||| ||||  |||||||||||
Sbjct: 64993 tggtctatcctcaccacacat 65013



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 253   ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301
             |||||||| ||||||||||| ||    ||||||||||| ||||||||||
Sbjct: 83767 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 83815



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   ctttcttctcgatgctgaaat 151
             |||||||||||||||||||||
Sbjct: 72920 ctttcttctcgatgctgaaat 72940



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   ctttcttctcgatgctgaaat 151
             |||||||||||||||||||||
Sbjct: 64830 ctttcttctcgatgctgaaat 64850



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>ref|XM_450977.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2322

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 149/184 (80%)
 Strand = Plus / Minus

                                                                        
Query: 233  cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
            |||| ||||| ||||  ||||| ||||  ||||||||||| || |||||||||||||| |
Sbjct: 2194 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 2135

                                                                        
Query: 293  atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352
            |||||||||| ||||||||||| || ||||| ||  | || | ||| ||   ||||||||
Sbjct: 2134 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 2075

                                                                        
Query: 353  taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412
             ||| ||  |  |||||||| |||| || | |||||||||||||||||||||||| ||| 
Sbjct: 2074 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 2015

                
Query: 413  cctt 416
            ||||
Sbjct: 2014 cctt 2011



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>dbj|AK060211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B07, full
            insert sequence
          Length = 1502

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 149/184 (80%)
 Strand = Plus / Minus

                                                                        
Query: 233  cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
            |||| ||||| ||||  ||||| ||||  ||||||||||| || |||||||||||||| |
Sbjct: 1205 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 1146

                                                                        
Query: 293  atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352
            |||||||||| ||||||||||| || ||||| ||  | || | ||| ||   ||||||||
Sbjct: 1145 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 1086

                                                                        
Query: 353  taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412
             ||| ||  |  |||||||| |||| || | |||||||||||||||||||||||| ||| 
Sbjct: 1085 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 1026

                
Query: 413  cctt 416
            ||||
Sbjct: 1025 cctt 1022



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>ref|XM_450981.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2396

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                        
Query: 233  cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
            |||||||||||||||| ||||| ||||| || ||||| || || ||||  | |||||| |
Sbjct: 2094 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 2035

                                           
Query: 293  atggcctattgtcaccacacatctctaagca 323
            ||||||||||  ||||| ||||||| |||||
Sbjct: 2034 atggcctattcacaccagacatctccaagca 2004



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>dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090B05, full
            insert sequence
          Length = 2453

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                        
Query: 233  cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292
            |||||||||||||||| ||||| ||||| || ||||| || || ||||  | |||||| |
Sbjct: 2151 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 2092

                                           
Query: 293  atggcctattgtcaccacacatctctaagca 323
            ||||||||||  ||||| ||||||| |||||
Sbjct: 2091 atggcctattcacaccagacatctccaagca 2061



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>dbj|AK111541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038H19, full
            insert sequence
          Length = 2604

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 234  ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293
            |||||| |||||||| |||||   ||| ||||| ||||| |||||||||| |||||| ||
Sbjct: 2241 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 2182

                                 
Query: 294  tggcctattgtcaccacacat 314
            ||| ||||  |||||||||||
Sbjct: 2181 tggtctatcctcaccacacat 2161



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ctttcttctcgatgctgaaat 151
            |||||||||||||||||||||
Sbjct: 2344 ctttcttctcgatgctgaaat 2324



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>emb|BX324111.12| Zebrafish DNA sequence from clone CH211-119C17 in linkage group 14,
              complete sequence
          Length = 163871

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 66     tacaaaataaacaaagcaaagca 88
              |||||||||||||||||||||||
Sbjct: 118843 tacaaaataaacaaagcaaagca 118865



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>emb|CR925821.12| Zebrafish DNA sequence from clone DKEY-27D1 in linkage group 14, complete
              sequence
          Length = 184616

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 66     tacaaaataaacaaagcaaagca 88
              |||||||||||||||||||||||
Sbjct: 141555 tacaaaataaacaaagcaaagca 141533



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>gb|AC146774.7| Medicago truncatula clone mth2-91k24, complete sequence
          Length = 122643

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 15    aattgactgtttattctattttt 37
             |||||||||||||||||||||||
Sbjct: 58493 aattgactgtttattctattttt 58471



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>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence
          Length = 187204

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 69    aaaataaacaaagcaaagcaata 91
             |||||||||||||||||||||||
Sbjct: 25507 aaaataaacaaagcaaagcaata 25529



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>gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, complete sequence
          Length = 180451

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 68    caaaataaacaaagcaaagcaa 89
             ||||||||||||||||||||||
Sbjct: 38370 caaaataaacaaagcaaagcaa 38391



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>ref|NM_194032.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1980

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 286  ttcatcgatggcctattgtcaccacacatctctaagca 323
            ||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 1745 ttcattgatggcctattgtcactgcacatgtctaagca 1708



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 70      aaataaacaaagcaaagcaatagtgt 95
               |||||| |||||||||||||||||||
Sbjct: 9171453 aaataaccaaagcaaagcaatagtgt 9171478



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 286      ttcatcgatggcctattgtcaccacacatctctaagca 323
                ||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 14881622 ttcattgatggcctattgtcactgcacatgtctaagca 14881585



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>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1642C07
          Length = 206004

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 286    ttcatcgatggcctattgtcaccacacatctctaagca 323
              ||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 115652 ttcattgatggcctattgtcactgcacatgtctaagca 115615



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 388    tccaagatttcctcaagcttattcaccttcat 419
              ||||| ||||||||||| |||||| |||||||
Sbjct: 115550 tccaacatttcctcaagtttattctccttcat 115519



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>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0697D09
          Length = 158479

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 286   ttcatcgatggcctattgtcaccacacatctctaagca 323
             ||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 66448 ttcattgatggcctattgtcactgcacatgtctaagca 66411



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>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0503E05
          Length = 168258

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 286    ttcatcgatggcctattgtcaccacacatctctaagca 323
              ||||| ||||||||||||||||  ||||| ||||||||
Sbjct: 117666 ttcattgatggcctattgtcactgcacatgtctaagca 117629



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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0012K14
          Length = 155544

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 70     aaataaacaaagcaaagcaatagtgt 95
              |||||| |||||||||||||||||||
Sbjct: 106947 aaataaccaaagcaaagcaatagtgt 106972



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>gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, complete sequence
          Length = 235405

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 74    aaacaaagcaaagcaatagtgtgattact 102
             |||||||||||||||||| ||| ||||||
Sbjct: 74265 aaacaaagcaaagcaatactgtaattact 74293



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>gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, complete sequence
          Length = 169152

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 69    aaaataaacaaagcaaagcaatagt 93
             ||||| |||||||||||||||||||
Sbjct: 45231 aaaattaacaaagcaaagcaatagt 45255



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>dbj|AK134170.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830465N24 product:unclassifiable, full
           insert sequence
          Length = 2941

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 74  aaacaaagcaaagcaatagtgtgattact 102
           |||||||||||||||||| ||| ||||||
Sbjct: 576 aaacaaagcaaagcaatactgtaattact 548



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>gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, complete sequence
          Length = 104854

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 69    aaaataaacaaagcaaagcaatagt 93
             ||||| |||||||||||||||||||
Sbjct: 83814 aaaattaacaaagcaaagcaatagt 83838



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>emb|BX005348.9| Zebrafish DNA sequence from clone DKEY-245J21 in linkage group 11,
             complete sequence
          Length = 145299

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    aaaataaacaaagcaaagcaa 89
             |||||||||||||||||||||
Sbjct: 69546 aaaataaacaaagcaaagcaa 69566



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>emb|BX323548.11| Zebrafish DNA sequence from clone DKEY-31D5 in linkage group 11,
             complete sequence
          Length = 229237

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    aaaataaacaaagcaaagcaa 89
             |||||||||||||||||||||
Sbjct: 76460 aaaataaacaaagcaaagcaa 76480



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>dbj|AK043438.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730095J18
           product:unclassifiable, full insert sequence
          Length = 2579

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 74  aaacaaagcaaagcaatagtgtgattact 102
           |||||||||||||||||| ||| ||||||
Sbjct: 766 aaacaaagcaaagcaatactgtaattact 738



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>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0599F09
          Length = 157415

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 384    atcatccaagatttcctcaagcttattcaccttcatcgcatacataaacatcatcga 440
              ||||| ||| || ||||| ||||| ||| ||||||||||| | | ||||||||||||
Sbjct: 106684 atcattcaacatatcctcgagcttgttctccttcatcgcagagagaaacatcatcga 106740



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>dbj|AK119296.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E06, full
            insert sequence
          Length = 2995

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 253  ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301
            |||||||| ||||||||||| ||    ||||||||||| ||||||||||
Sbjct: 2573 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 2525



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>emb|AL928827.10| Zebrafish DNA sequence from clone DKEY-284M18 in linkage group 20,
             complete sequence
          Length = 192407

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    aaaataaacaaagcaaagcaa 89
             |||||||||||||||||||||
Sbjct: 96526 aaaataaacaaagcaaagcaa 96546



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>emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chromosome 2, complete
             sequence
          Length = 98852

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    aaaataaacaaagcaaagcaa 89
             |||||||||||||||||||||
Sbjct: 84468 aaaataaacaaagcaaagcaa 84488



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>gb|AC154130.1| Tribolium castaneum  BAC T.cast_C11O3 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 148539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 68    caaaataaacaaagcaaagcaatagtgt 95
             ||||||||| |||||||||||| |||||
Sbjct: 65441 caaaataaaaaaagcaaagcaacagtgt 65468



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>gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome 12, complete sequence
          Length = 269200

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaataaacaaagcaaagcaa 89
              ||||||||||||||||||||
Sbjct: 221689 aaataaacaaagcaaagcaa 221670



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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaaataaacaaagcaaagca 88
             ||||||||||||||||||||
Sbjct: 30588 aaaataaacaaagcaaagca 30607



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>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence
          Length = 186115

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aaaataaacaaagcaaagca 88
             ||||||||||||||||||||
Sbjct: 41959 aaaataaacaaagcaaagca 41940



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>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence
          Length = 177576

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aaacaaagcaaagcaatagt 93
              ||||||||||||||||||||
Sbjct: 108043 aaacaaagcaaagcaatagt 108024



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>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence
          Length = 244220

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aaataaacaaagcaaagcaa 89
              ||||||||||||||||||||
Sbjct: 191151 aaataaacaaagcaaagcaa 191170



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>gb|AC073308.4| Homo sapiens BAC clone RP11-13M3 from 7, complete sequence
          Length = 154344

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 64    aatacaaaataaacaaagcaaagcaata 91
             ||||||||||||| ||| ||||||||||
Sbjct: 94095 aatacaaaataaaaaaatcaaagcaata 94122



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>gb|AC134328.2| Mus musculus BAC clone RP24-299H18 from chromosome 12, complete sequence
          Length = 189420

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aaataaacaaagcaaagcaa 89
              ||||||||||||||||||||
Sbjct: 169074 aaataaacaaagcaaagcaa 169093



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>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence
          Length = 173357

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaataaacaaagcaaagcaa 89
             ||||||||||||||||||||
Sbjct: 62322 aaataaacaaagcaaagcaa 62303



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>gb|AC122186.2| Mus musculus BAC clone RP23-19M20 from 1, complete sequence
          Length = 160653

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     acaaaataaacaaagcaaag 86
              ||||||||||||||||||||
Sbjct: 140928 acaaaataaacaaagcaaag 140909



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>gb|AC121607.2| Mus musculus BAC clone RP23-314P9 from 1, complete sequence
          Length = 158056

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     acaaaataaacaaagcaaag 86
              ||||||||||||||||||||
Sbjct: 157495 acaaaataaacaaagcaaag 157514



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>gb|AC087883.12| Homo sapiens 12q BAC RP11-335M9 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 161166

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    ataacaattgactgtttatt 29
             ||||||||||||||||||||
Sbjct: 31042 ataacaattgactgtttatt 31061



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>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     acaaaataaacaaagcaaag 86
              ||||||||||||||||||||
Sbjct: 169505 acaaaataaacaaagcaaag 169486



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>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06,
             complete sequence
          Length = 129608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    ttttgaatacaaaataaaca 78
             ||||||||||||||||||||
Sbjct: 65576 ttttgaatacaaaataaaca 65557



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>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
          Length = 198220

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     caaagcaaagcaatagtgtg 96
              ||||||||||||||||||||
Sbjct: 158771 caaagcaaagcaatagtgtg 158790



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>gb|AC006194.4| Arabidopsis thaliana chromosome 2 clone T17A11 map GPC6, complete
             sequence
          Length = 92260

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    tacaaaataaacaaagcaaagcaa 89
             ||||||||| ||||||||||||||
Sbjct: 84246 tacaaaatagacaaagcaaagcaa 84223



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>ref|NM_132934.2| Drosophila melanogaster CG4756-RA (CG4756), mRNA
          Length = 1663

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 aaacaaagcaaagcaatagt 93
          ||||||||||||||||||||
Sbjct: 50 aaacaaagcaaagcaatagt 69



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>gb|AY071452.1| Drosophila melanogaster RE53486 full length cDNA
          Length = 1681

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 aaacaaagcaaagcaatagt 93
          ||||||||||||||||||||
Sbjct: 50 aaacaaagcaaagcaatagt 69



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>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16,
              complete sequence
          Length = 211852

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aaaataaacaaagcaaagca 88
              ||||||||||||||||||||
Sbjct: 116909 aaaataaacaaagcaaagca 116890



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 59      ttttgaatacaaaataaaca 78
               ||||||||||||||||||||
Sbjct: 4675443 ttttgaatacaaaataaaca 4675424



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>gb|AC022350.2|AC022350 Drosophila melanogaster, chromosome X, region 15B-15B, BAC clone
              BACR18G21, complete sequence
          Length = 168514

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     aaacaaagcaaagcaatagt 93
              ||||||||||||||||||||
Sbjct: 165907 aaacaaagcaaagcaatagt 165926



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>gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-327J16,
             complete sequence
          Length = 116793

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaaataaacaaagcaaagca 88
             ||||||||||||||||||||
Sbjct: 13556 aaaataaacaaagcaaagca 13575



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 130     gctttcttctcgatgctgaaatat 153
               ||||||||||||| ||||||||||
Sbjct: 1680143 gctttcttctcgaggctgaaatat 1680166



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>gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176924

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 67    acaaaataaacaaagcaaagcaat 90
             |||||||||||||| |||||||||
Sbjct: 90640 acaaaataaacaaaacaaagcaat 90617



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>emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chromosome X, complete
             sequence
          Length = 212406

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    tacaaaataaacaaagcaaa 85
             ||||||||||||||||||||
Sbjct: 31615 tacaaaataaacaaagcaaa 31596



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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     tacaaaataaacaaagcaaa 85
              ||||||||||||||||||||
Sbjct: 103977 tacaaaataaacaaagcaaa 103958



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>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete
              sequence
          Length = 300468

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     aaacaaagcaaagcaatagt 93
              ||||||||||||||||||||
Sbjct: 150346 aaacaaagcaaagcaatagt 150365



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>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10,
             complete sequence
          Length = 126112

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    acaaaataaacaaagcaaag 86
             ||||||||||||||||||||
Sbjct: 54375 acaaaataaacaaagcaaag 54356



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>emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chromosome 2, complete
              sequence
          Length = 143861

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aaaataaacaaagcaaagca 88
              ||||||||||||||||||||
Sbjct: 135675 aaaataaacaaagcaaagca 135656



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>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to
             11.6 cM, complete sequence
          Length = 105654

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    caaagcaaagcaatagtgtg 96
             ||||||||||||||||||||
Sbjct: 56167 caaagcaaagcaatagtgtg 56186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,677,917
Number of Sequences: 3902068
Number of extensions: 4677917
Number of successful extensions: 97603
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97317
Number of HSP's gapped (non-prelim): 282
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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