Clone Name | rbastl38c08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 93.7 bits (47), Expect = 5e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 193 tccccaagtaggcattccatctcttcagggttccgctgcacccatggatgttgcatcacc 252 |||||||||| || |||||||||||||| || | || |||||||||||||||| ||| Sbjct: 17895376 tccccaagtaagctctccatctcttcaggattttgttgtgcccatggatgttgcattacc 17895435 Query: 253 ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctattgtcaccacac 312 ||||||| ||||| |||||||| ||||||||||||||| | || ||||| |||||| || Sbjct: 17895436 ttcctcaacctatcgagcttgtctgcaacttccttcatcaacggtctattctcaccagac 17895495 Query: 313 atctctaagca 323 || || ||||| Sbjct: 17895496 atttccaagca 17895506 Score = 87.7 bits (44), Expect = 3e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||| ||||| |||| ||||| |||| ||||||||||| || |||||||||||||| | Sbjct: 17906930 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 17906989 Query: 293 atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352 |||||||||| ||||||||||| || ||||| || | || | ||| || |||||||| Sbjct: 17906990 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 17907049 Query: 353 taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412 ||| || | |||||||| |||| || | |||||||||||||||||||||||| ||| Sbjct: 17907050 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 17907109 Query: 413 cctt 416 |||| Sbjct: 17907110 cctt 17907113 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 234 ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293 |||||| |||||||| ||||| ||| ||||| ||||| ||||||||||||||||| || Sbjct: 17922204 ccatgggtgttgcattaccttaatcaacctatcgagcttctccgcaacttccttcatgga 17922263 Query: 294 tggcctattgtcaccacacat 314 ||| |||| ||||||||||| Sbjct: 17922264 tggtctatcctcaccacacat 17922284 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||||||||||||||| ||||| ||||| || ||||| || || |||| | |||||| | Sbjct: 17948171 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 17948230 Query: 293 atggcctattgtcaccacacatctctaagca 323 |||||||||| ||||| ||||||| ||||| Sbjct: 17948231 atggcctattcacaccagacatctccaagca 17948261 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 234 ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293 |||||| |||||||| ||||| ||| ||||| ||||| |||||||||| |||||| || Sbjct: 17914114 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 17914173 Query: 294 tggcctattgtcaccacacat 314 ||| |||| ||||||||||| Sbjct: 17914174 tggtctatcctcaccacacat 17914194 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Plus Query: 253 ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301 |||||||| ||||||||||| || ||||||||||| |||||||||| Sbjct: 17932948 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 17932996 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctttcttctcgatgctgaaat 151 ||||||||||||||||||||| Sbjct: 17922101 ctttcttctcgatgctgaaat 17922121 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctttcttctcgatgctgaaat 151 ||||||||||||||||||||| Sbjct: 17914011 ctttcttctcgatgctgaaat 17914031 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 384 atcatccaagatttcctcaagcttattcaccttcatcgcatacataaacatcatcga 440 ||||| ||| || ||||| ||||| ||| ||||||||||| | | |||||||||||| Sbjct: 12441100 atcattcaacatatcctcgagcttgttctccttcatcgcagagagaaacatcatcga 12441156
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 93.7 bits (47), Expect = 5e-16 Identities = 110/131 (83%) Strand = Plus / Plus Query: 193 tccccaagtaggcattccatctcttcagggttccgctgcacccatggatgttgcatcacc 252 |||||||||| || |||||||||||||| || | || |||||||||||||||| ||| Sbjct: 46195 tccccaagtaagctctccatctcttcaggattttgttgtgcccatggatgttgcattacc 46254 Query: 253 ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctattgtcaccacac 312 ||||||| ||||| |||||||| ||||||||||||||| | || ||||| |||||| || Sbjct: 46255 ttcctcaacctatcgagcttgtctgcaacttccttcatcaacggtctattctcaccagac 46314 Query: 313 atctctaagca 323 || || ||||| Sbjct: 46315 atttccaagca 46325 Score = 87.7 bits (44), Expect = 3e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||| ||||| |||| ||||| |||| ||||||||||| || |||||||||||||| | Sbjct: 57749 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 57808 Query: 293 atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352 |||||||||| ||||||||||| || ||||| || | || | ||| || |||||||| Sbjct: 57809 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 57868 Query: 353 taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412 ||| || | |||||||| |||| || | |||||||||||||||||||||||| ||| Sbjct: 57869 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 57928 Query: 413 cctt 416 |||| Sbjct: 57929 cctt 57932 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 234 ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293 |||||| |||||||| ||||| ||| ||||| ||||| ||||||||||||||||| || Sbjct: 73023 ccatgggtgttgcattaccttaatcaacctatcgagcttctccgcaacttccttcatgga 73082 Query: 294 tggcctattgtcaccacacat 314 ||| |||| ||||||||||| Sbjct: 73083 tggtctatcctcaccacacat 73103 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||||||||||||||| ||||| ||||| || ||||| || || |||| | |||||| | Sbjct: 98990 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 99049 Query: 293 atggcctattgtcaccacacatctctaagca 323 |||||||||| ||||| ||||||| ||||| Sbjct: 99050 atggcctattcacaccagacatctccaagca 99080 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 234 ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293 |||||| |||||||| ||||| ||| ||||| ||||| |||||||||| |||||| || Sbjct: 64933 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 64992 Query: 294 tggcctattgtcaccacacat 314 ||| |||| ||||||||||| Sbjct: 64993 tggtctatcctcaccacacat 65013 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Plus Query: 253 ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301 |||||||| ||||||||||| || ||||||||||| |||||||||| Sbjct: 83767 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 83815 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctttcttctcgatgctgaaat 151 ||||||||||||||||||||| Sbjct: 72920 ctttcttctcgatgctgaaat 72940 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctttcttctcgatgctgaaat 151 ||||||||||||||||||||| Sbjct: 64830 ctttcttctcgatgctgaaat 64850
>ref|XM_450977.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2322 Score = 87.7 bits (44), Expect = 3e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||| ||||| |||| ||||| |||| ||||||||||| || |||||||||||||| | Sbjct: 2194 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 2135 Query: 293 atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352 |||||||||| ||||||||||| || ||||| || | || | ||| || |||||||| Sbjct: 2134 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 2075 Query: 353 taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412 ||| || | |||||||| |||| || | |||||||||||||||||||||||| ||| Sbjct: 2074 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 2015 Query: 413 cctt 416 |||| Sbjct: 2014 cctt 2011
>dbj|AK060211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B07, full insert sequence Length = 1502 Score = 87.7 bits (44), Expect = 3e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||| ||||| |||| ||||| |||| ||||||||||| || |||||||||||||| | Sbjct: 1205 cccaaggatggtgcaaaacctttctcaagctatcaagcttttctgcaacttccttcattg 1146 Query: 293 atggcctattgtcaccacacatctctaagcaccgcatcgctagctccgccgcctcttcaa 352 |||||||||| ||||||||||| || ||||| || | || | ||| || |||||||| Sbjct: 1145 atggcctattctcaccacacatttccaagcatcgtctggccaactcagcaatctcttcaa 1086 Query: 353 taatttctgtgctctcctcgttcttgatatcatcatccaagatttcctcaagcttattca 412 ||| || | |||||||| |||| || | |||||||||||||||||||||||| ||| Sbjct: 1085 gaatctccatattctcctcgctcttaatttgatcatccaagatttcctcaagcttgttct 1026 Query: 413 cctt 416 |||| Sbjct: 1025 cctt 1022
>ref|XM_450981.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2396 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||||||||||||||| ||||| ||||| || ||||| || || |||| | |||||| | Sbjct: 2094 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 2035 Query: 293 atggcctattgtcaccacacatctctaagca 323 |||||||||| ||||| ||||||| ||||| Sbjct: 2034 atggcctattcacaccagacatctccaagca 2004
>dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090B05, full insert sequence Length = 2453 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 233 cccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcg 292 |||||||||||||||| ||||| ||||| || ||||| || || |||| | |||||| | Sbjct: 2151 cccatggatgttgcataacctttctcagcctgtcaagattatctgcaatgtgcttcattg 2092 Query: 293 atggcctattgtcaccacacatctctaagca 323 |||||||||| ||||| ||||||| ||||| Sbjct: 2091 atggcctattcacaccagacatctccaagca 2061
>dbj|AK111541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038H19, full insert sequence Length = 2604 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 234 ccatggatgttgcatcaccttcctcagactatcaagcttgtccgcaacttccttcatcga 293 |||||| |||||||| ||||| ||| ||||| ||||| |||||||||| |||||| || Sbjct: 2241 ccatgggtgttgcattaccttaaccagcctatcgagcttctccgcaactttcttcatgga 2182 Query: 294 tggcctattgtcaccacacat 314 ||| |||| ||||||||||| Sbjct: 2181 tggtctatcctcaccacacat 2161 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ctttcttctcgatgctgaaat 151 ||||||||||||||||||||| Sbjct: 2344 ctttcttctcgatgctgaaat 2324
>emb|BX324111.12| Zebrafish DNA sequence from clone CH211-119C17 in linkage group 14, complete sequence Length = 163871 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 tacaaaataaacaaagcaaagca 88 ||||||||||||||||||||||| Sbjct: 118843 tacaaaataaacaaagcaaagca 118865
>emb|CR925821.12| Zebrafish DNA sequence from clone DKEY-27D1 in linkage group 14, complete sequence Length = 184616 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 66 tacaaaataaacaaagcaaagca 88 ||||||||||||||||||||||| Sbjct: 141555 tacaaaataaacaaagcaaagca 141533
>gb|AC146774.7| Medicago truncatula clone mth2-91k24, complete sequence Length = 122643 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 15 aattgactgtttattctattttt 37 ||||||||||||||||||||||| Sbjct: 58493 aattgactgtttattctattttt 58471
>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence Length = 187204 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaata 91 ||||||||||||||||||||||| Sbjct: 25507 aaaataaacaaagcaaagcaata 25529
>gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, complete sequence Length = 180451 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 caaaataaacaaagcaaagcaa 89 |||||||||||||||||||||| Sbjct: 38370 caaaataaacaaagcaaagcaa 38391
>ref|NM_194032.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1980 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 286 ttcatcgatggcctattgtcaccacacatctctaagca 323 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 1745 ttcattgatggcctattgtcactgcacatgtctaagca 1708
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 70 aaataaacaaagcaaagcaatagtgt 95 |||||| ||||||||||||||||||| Sbjct: 9171453 aaataaccaaagcaaagcaatagtgt 9171478
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 286 ttcatcgatggcctattgtcaccacacatctctaagca 323 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 14881622 ttcattgatggcctattgtcactgcacatgtctaagca 14881585
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1642C07 Length = 206004 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 286 ttcatcgatggcctattgtcaccacacatctctaagca 323 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 115652 ttcattgatggcctattgtcactgcacatgtctaagca 115615 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 388 tccaagatttcctcaagcttattcaccttcat 419 ||||| ||||||||||| |||||| ||||||| Sbjct: 115550 tccaacatttcctcaagtttattctccttcat 115519
>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697D09 Length = 158479 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 286 ttcatcgatggcctattgtcaccacacatctctaagca 323 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 66448 ttcattgatggcctattgtcactgcacatgtctaagca 66411
>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503E05 Length = 168258 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 286 ttcatcgatggcctattgtcaccacacatctctaagca 323 ||||| |||||||||||||||| ||||| |||||||| Sbjct: 117666 ttcattgatggcctattgtcactgcacatgtctaagca 117629
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 70 aaataaacaaagcaaagcaatagtgt 95 |||||| ||||||||||||||||||| Sbjct: 106947 aaataaccaaagcaaagcaatagtgt 106972
>gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, complete sequence Length = 235405 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 aaacaaagcaaagcaatagtgtgattact 102 |||||||||||||||||| ||| |||||| Sbjct: 74265 aaacaaagcaaagcaatactgtaattact 74293
>gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, complete sequence Length = 169152 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaatagt 93 ||||| ||||||||||||||||||| Sbjct: 45231 aaaattaacaaagcaaagcaatagt 45255
>dbj|AK134170.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830465N24 product:unclassifiable, full insert sequence Length = 2941 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 74 aaacaaagcaaagcaatagtgtgattact 102 |||||||||||||||||| ||| |||||| Sbjct: 576 aaacaaagcaaagcaatactgtaattact 548
>gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, complete sequence Length = 104854 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaatagt 93 ||||| ||||||||||||||||||| Sbjct: 83814 aaaattaacaaagcaaagcaatagt 83838
>emb|BX005348.9| Zebrafish DNA sequence from clone DKEY-245J21 in linkage group 11, complete sequence Length = 145299 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaa 89 ||||||||||||||||||||| Sbjct: 69546 aaaataaacaaagcaaagcaa 69566
>emb|BX323548.11| Zebrafish DNA sequence from clone DKEY-31D5 in linkage group 11, complete sequence Length = 229237 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaa 89 ||||||||||||||||||||| Sbjct: 76460 aaaataaacaaagcaaagcaa 76480
>dbj|AK043438.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730095J18 product:unclassifiable, full insert sequence Length = 2579 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 74 aaacaaagcaaagcaatagtgtgattact 102 |||||||||||||||||| ||| |||||| Sbjct: 766 aaacaaagcaaagcaatactgtaattact 738
>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0599F09 Length = 157415 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 384 atcatccaagatttcctcaagcttattcaccttcatcgcatacataaacatcatcga 440 ||||| ||| || ||||| ||||| ||| ||||||||||| | | |||||||||||| Sbjct: 106684 atcattcaacatatcctcgagcttgttctccttcatcgcagagagaaacatcatcga 106740
>dbj|AK119296.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E06, full insert sequence Length = 2995 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 253 ttcctcagactatcaagcttgtccgcaacttccttcatcgatggcctat 301 |||||||| ||||||||||| || ||||||||||| |||||||||| Sbjct: 2573 ttcctcagcctatcaagcttatctcttacttccttcattgatggcctat 2525
>emb|AL928827.10| Zebrafish DNA sequence from clone DKEY-284M18 in linkage group 20, complete sequence Length = 192407 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaa 89 ||||||||||||||||||||| Sbjct: 96526 aaaataaacaaagcaaagcaa 96546
>emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chromosome 2, complete sequence Length = 98852 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagcaa 89 ||||||||||||||||||||| Sbjct: 84468 aaaataaacaaagcaaagcaa 84488
>gb|AC154130.1| Tribolium castaneum BAC T.cast_C11O3 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 148539 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 caaaataaacaaagcaaagcaatagtgt 95 ||||||||| |||||||||||| ||||| Sbjct: 65441 caaaataaaaaaagcaaagcaacagtgt 65468
>gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome 12, complete sequence Length = 269200 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aaataaacaaagcaaagcaa 89 |||||||||||||||||||| Sbjct: 221689 aaataaacaaagcaaagcaa 221670
>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence Length = 214202 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagca 88 |||||||||||||||||||| Sbjct: 30588 aaaataaacaaagcaaagca 30607
>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence Length = 186115 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaaataaacaaagcaaagca 88 |||||||||||||||||||| Sbjct: 41959 aaaataaacaaagcaaagca 41940
>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence Length = 177576 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 aaacaaagcaaagcaatagt 93 |||||||||||||||||||| Sbjct: 108043 aaacaaagcaaagcaatagt 108024
>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence Length = 244220 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaataaacaaagcaaagcaa 89 |||||||||||||||||||| Sbjct: 191151 aaataaacaaagcaaagcaa 191170
>gb|AC073308.4| Homo sapiens BAC clone RP11-13M3 from 7, complete sequence Length = 154344 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 aatacaaaataaacaaagcaaagcaata 91 ||||||||||||| ||| |||||||||| Sbjct: 94095 aatacaaaataaaaaaatcaaagcaata 94122
>gb|AC134328.2| Mus musculus BAC clone RP24-299H18 from chromosome 12, complete sequence Length = 189420 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaataaacaaagcaaagcaa 89 |||||||||||||||||||| Sbjct: 169074 aaataaacaaagcaaagcaa 169093
>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence Length = 173357 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aaataaacaaagcaaagcaa 89 |||||||||||||||||||| Sbjct: 62322 aaataaacaaagcaaagcaa 62303
>gb|AC122186.2| Mus musculus BAC clone RP23-19M20 from 1, complete sequence Length = 160653 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 acaaaataaacaaagcaaag 86 |||||||||||||||||||| Sbjct: 140928 acaaaataaacaaagcaaag 140909
>gb|AC121607.2| Mus musculus BAC clone RP23-314P9 from 1, complete sequence Length = 158056 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 acaaaataaacaaagcaaag 86 |||||||||||||||||||| Sbjct: 157495 acaaaataaacaaagcaaag 157514
>gb|AC087883.12| Homo sapiens 12q BAC RP11-335M9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161166 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ataacaattgactgtttatt 29 |||||||||||||||||||| Sbjct: 31042 ataacaattgactgtttatt 31061
>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research Institute) complete sequence Length = 242500 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 acaaaataaacaaagcaaag 86 |||||||||||||||||||| Sbjct: 169505 acaaaataaacaaagcaaag 169486
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttttgaatacaaaataaaca 78 |||||||||||||||||||| Sbjct: 65576 ttttgaatacaaaataaaca 65557
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 caaagcaaagcaatagtgtg 96 |||||||||||||||||||| Sbjct: 158771 caaagcaaagcaatagtgtg 158790
>gb|AC006194.4| Arabidopsis thaliana chromosome 2 clone T17A11 map GPC6, complete sequence Length = 92260 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 tacaaaataaacaaagcaaagcaa 89 ||||||||| |||||||||||||| Sbjct: 84246 tacaaaatagacaaagcaaagcaa 84223
>ref|NM_132934.2| Drosophila melanogaster CG4756-RA (CG4756), mRNA Length = 1663 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaacaaagcaaagcaatagt 93 |||||||||||||||||||| Sbjct: 50 aaacaaagcaaagcaatagt 69
>gb|AY071452.1| Drosophila melanogaster RE53486 full length cDNA Length = 1681 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaacaaagcaaagcaatagt 93 |||||||||||||||||||| Sbjct: 50 aaacaaagcaaagcaatagt 69
>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16, complete sequence Length = 211852 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaaataaacaaagcaaagca 88 |||||||||||||||||||| Sbjct: 116909 aaaataaacaaagcaaagca 116890
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttttgaatacaaaataaaca 78 |||||||||||||||||||| Sbjct: 4675443 ttttgaatacaaaataaaca 4675424
>gb|AC022350.2|AC022350 Drosophila melanogaster, chromosome X, region 15B-15B, BAC clone BACR18G21, complete sequence Length = 168514 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaacaaagcaaagcaatagt 93 |||||||||||||||||||| Sbjct: 165907 aaacaaagcaaagcaatagt 165926
>gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-327J16, complete sequence Length = 116793 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aaaataaacaaagcaaagca 88 |||||||||||||||||||| Sbjct: 13556 aaaataaacaaagcaaagca 13575
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 gctttcttctcgatgctgaaatat 153 ||||||||||||| |||||||||| Sbjct: 1680143 gctttcttctcgaggctgaaatat 1680166
>gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176924 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 acaaaataaacaaagcaaagcaat 90 |||||||||||||| ||||||||| Sbjct: 90640 acaaaataaacaaaacaaagcaat 90617
>emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chromosome X, complete sequence Length = 212406 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tacaaaataaacaaagcaaa 85 |||||||||||||||||||| Sbjct: 31615 tacaaaataaacaaagcaaa 31596
>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence Length = 153206 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tacaaaataaacaaagcaaa 85 |||||||||||||||||||| Sbjct: 103977 tacaaaataaacaaagcaaa 103958
>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete sequence Length = 300468 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaacaaagcaaagcaatagt 93 |||||||||||||||||||| Sbjct: 150346 aaacaaagcaaagcaatagt 150365
>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10, complete sequence Length = 126112 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 acaaaataaacaaagcaaag 86 |||||||||||||||||||| Sbjct: 54375 acaaaataaacaaagcaaag 54356
>emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chromosome 2, complete sequence Length = 143861 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaaataaacaaagcaaagca 88 |||||||||||||||||||| Sbjct: 135675 aaaataaacaaagcaaagca 135656
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to 11.6 cM, complete sequence Length = 105654 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 caaagcaaagcaatagtgtg 96 |||||||||||||||||||| Sbjct: 56167 caaagcaaagcaatagtgtg 56186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,677,917 Number of Sequences: 3902068 Number of extensions: 4677917 Number of successful extensions: 97603 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 97317 Number of HSP's gapped (non-prelim): 282 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)