>Y1257_METJA (Q58654) Hypothetical protein MJ1257|
          Length = 349

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 31  KSIQVRLASNTPPTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLK 174
           K I   +   T  T LY   SLFLT    KH     +  H    R LK
Sbjct: 260 KDINEEIDLITNDTNLYPDESLFLTLKFAKHLKTNGYIIHTLKARNLK 307

>YMV6_YEAST (Q04748) Hypothetical 104.7 kDa protein in NCA1-HMS1 intergenic|
           region
          Length = 898

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 ISPTLQPSEL*SSSAGRKRGRPCATYSRRIASRP 241
           I+P L+  +  SS +      PC  Y+RRI ++P
Sbjct: 658 INPLLESKQQVSSESSLSTSNPCRFYNRRIITKP 691

>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 152 RWAKCAGGDVCFVC 111
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33

>ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 43  VRLASNTPPTQLYSSPSLFLTHTHTK 120
           + L    PPT+L+SS  ++LTH + K
Sbjct: 146 IDLVDGIPPTKLHSSYGIYLTHCNQK 171

>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)|
           (Transcriptional coactivator Sp110) (Interferon-induced
           protein 41/75)
          Length = 689

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
 Frame = +3

Query: 12  NEPSLN*KHSSQISIQHPSNSTVQLPIPFLDTHTHKTHITSCAFRPPCNRPNSKVRR--- 182
           +EP  + + S++I  + PS S   LP+P L      T +T+       N           
Sbjct: 157 SEPGTSSQQSTEILSESPSPSDPVLPLPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSL 216

Query: 183 -----RGENEGALAQLTHGESPADRPNSLHAP--ALPERKINS 290
                +  ++  + Q+   E P + P   H+P  ++PE + NS
Sbjct: 217 LTSTVQVASDNLIPQIRDKEDPQEMP---HSPLGSMPEIRDNS 256

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 58  NTPPTQLYSSPSLFL--THTHTKHTSPPA 138
           N  PT++ S P + L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119

>ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1-like protein|
          Length = 406

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
 Frame = +3

Query: 147 PPCNRPNSK------VRRRGENEGALAQLTHGESPADRPNSLHAPALPERKINSKTGGNL 308
           PP  +P  +      +  + E E        G  PA+ P +   P  PERK   +T    
Sbjct: 89  PPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQ 148

Query: 309 LQL 317
            QL
Sbjct: 149 FQL 151

>CRTI_STRGR (P54981) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 507

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 37  IQVRLASNTP--PTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLKFVGGAKTRAPLR 210
           +  RL   TP  P  L  SPS  + HT T  T P    AH     T+ F  GA  +    
Sbjct: 286 VSYRLLGRTPHRPLPLRHSPSAVILHTGTDRTWP--DLAH----HTISF--GAAWKNTFH 337

Query: 211 NLLTANRQQTVRTRYMPQPCRREK*IAKPG 300
            L    R  +  +  + +P   +  +A PG
Sbjct: 338 ELTRTGRLMSDPSLLITRPTATDPSLAPPG 367

>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 708

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = -2

Query: 301 PPVLLFIFLSGKAGACSEFGRSAGDSP*VSCA-----RAPSFSPRRRTLEFGRLQGGRNA 137
           P V  FIF      AC+  GRS G     + A     +A  F P R  +    + GG +A
Sbjct: 288 PCVFPFIFEGHSYSACTTKGRSDGYRWCATTANYDQDKADGFCPTRADV---TVTGGNSA 344

Query: 136 QEVMCVLCVCVSRKGMGSCTVE 71
            E MCV       K   +CT E
Sbjct: 345 GE-MCVFPFVFLGKQYSTCTSE 365

>ALN_BACSU (O32137) Allantoinase (EC 3.5.2.5)|
          Length = 446

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  SLFLTHTHTKHTSPPAHFAHLATVRTLKFVGGAK 192
           +++ T  + K T  P HF H++T + ++ +  AK
Sbjct: 220 AVYRTIQYAKVTGCPVHFVHISTAKAVRLIREAK 253

>TXND3_RAT (Q715S9) Thioredoxin domain-containing protein 3|
           (Spermatid-specific thioredoxin-2) (Sptrx-2)
          Length = 587

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
 Frame = +1

Query: 34  SIQVRLAS-NTPPTQLYSSPSLFLTHTHTKHTSPP--------AHFAHLATVRTLKFVGG 186
           S+ VR AS N P  Q Y S S     T  +H  PP         H +H   +  LK +  
Sbjct: 414 SLCVRFASGNFPVNQFYGSSSKAAAETEIEHFFPPQSTLALIKPHVSHKERMEILKAIRD 473

Query: 187 AK 192
           A+
Sbjct: 474 AR 475


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,465,455
Number of Sequences: 219361
Number of extensions: 1166490
Number of successful extensions: 3078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3078
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)