>RS18_MESFL (Q6F235) 30S ribosomal protein S18|
          Length = 76

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 384 LSAMAGGGGRLTPARITGGHQEHRPQLVVLRVRQMQHLMMP 262
           L     G G++ P RITG   +H+ QL V   R  Q  ++P
Sbjct: 32  LKKFISGNGQILPRRITGTSPKHQRQLAVAIKRARQMALLP 72

>BRCC3_HUMAN (P46736) BRCA1/BRCA2-containing complex subunit 3|
          Length = 316

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
 Frame = -3

Query: 393 PR*LSAMAGGGGRLT-----PARITGGHQEHR-----PQLVVLRVRQMQHLM---MPSLF 253
           P  LSA +    RL      P R+ G +  H      P  V +R + M  +M      L 
Sbjct: 94  PEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLI 153

Query: 252 ILCLPWEERVSGSSMLYTL*ASDQRAKGSVSLHRP 148
             C   ++      +LYT   S Q  K S SLH P
Sbjct: 154 FSCFIEDKNTKTGRVLYTCFQSIQAQKSSESLHGP 188

>RRPL_TOSV (P37800) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2095

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 184  SEGQR-KRFSSPSVWRVITDSCTLRWTPTLYITRARAMLFSLSPQSF 47
            + GQR KR    SVW   T     +W    Y+T+   ML   +PQ +
Sbjct: 971  THGQRAKRRCGRSVWTCATSDDARKWNQGHYVTKFALMLCEFTPQEW 1017

>ENV_HV2D2 (P15831) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 859

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 401 GGSPGDYQQWPGEVDALH 348
           GG+ GDY+ WP +++ +H
Sbjct: 741 GGNDGDYRSWPWQIEYIH 758

>FA8_PIG (P12263) Coagulation factor VIII precursor (Procoagulant component)|
          Length = 2133

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 389  GDYQQWPGEVDALHQHGSLEVTKSTDLNSW 300
            G Y QW  ++  LH  GS+    + D +SW
Sbjct: 1842 GQYGQWAPKLARLHYSGSINAWSTKDPHSW 1871

>MATK_OENHO (Q9MTQ1) Maturase K (Intron maturase)|
          Length = 512

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -1

Query: 203 TPCKHQ---IRGPKEAFLFTVR-VACHYRFLYITMDTDALHYKSQSDALLFVAAIFF 45
           TP KH    ++G    FLF      C Y  +++ +   + H++S S  + F   +F+
Sbjct: 194 TPKKHITLFLKGNSRFFLFLYNSYVCEYESIFLFIRNQSSHFQSTSSGVFFERILFY 250

>HGFL_HUMAN (P26927) Hepatocyte growth factor-like protein precursor|
           (Macrophage stimulatory protein) (MSP)
           (Macrophage-stimulating protein) [Contains: Hepatocyte
           growth factor-like protein alpha chain; Hepatocyte
           growth factor-like protein beta chain]
          Length = 711

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 357 RLTPARITGGHQEHRPQLVVLRVRQMQHLMMPSL 256
           R +  R+ GGH  + P  V LR RQ QH    SL
Sbjct: 478 RRSKLRVVGGHPGNSPWTVSLRNRQGQHFCGGSL 511

>RF3_COXBU (Q83DC7) Peptide chain release factor 3 (RF-3)|
          Length = 525

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 380 QQWPGEVDALHQHGSLEV 327
           + WPG++  LH HG++++
Sbjct: 354 EAWPGDIIGLHNHGTIQI 371

>FLGA_SALTY (P40131) Flagella basal body P-ring formation protein flgA|
           precursor
          Length = 219

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 384 LSAMAGGGGRLTPARIT--GGHQEHRPQLVVLRVRQMQ 277
           ++A    GG+LTPA +T   G  +  P   VL +RQ+Q
Sbjct: 100 VAAPIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQ 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,727,964
Number of Sequences: 219361
Number of extensions: 1289672
Number of successful extensions: 3376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)