>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)|
            (Ribosomal RNA-processing protein 44) (DIS3 protein
            homolog)
          Length = 1029

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 42/82 (51%)
 Frame = -3

Query: 451  EARIVKIKANGFIVFVPKFGIEGPIYLTAKGDKGADWVVDEVHQKVTKPGTNISYAVLQS 272
            E  ++ ++ NG  VFVPK+G+E  I L      G    V+E+  KV     ++    L+ 
Sbjct: 930  EGFVMGVRNNGIQVFVPKYGLESIIVLQTSAASGTTIDVEEMSVKV---NGDVVIKELEP 986

Query: 271  VMIHMEVVEPQPHRPKLQLTLI 206
            V + + V E    RP+++L LI
Sbjct: 987  VTVRISVNEKNQQRPRVELQLI 1008

>DIS3_SCHPO (P37202) Mitotic control protein dis3|
          Length = 970

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
 Frame = -3

Query: 457  DTEARIVKIKANGFIVFVPKFGIEGPIY---LTAKGDKGADWVVDEVHQKV-----TKPG 302
            + +A ++K+  NGF+VF+ +FG+EG +Y   L++  +   ++V DE    +      KP 
Sbjct: 878  EEDAYVIKVFKNGFVVFIARFGLEGIVYTKSLSSVLEPNVEYVEDEYKLNIEIRDQPKPQ 937

Query: 301  TNISYAVLQSVMIHMEVV-EPQPHRPKLQLTLI 206
            T +   + Q V + +  V +    + K+Q+TL+
Sbjct: 938  T-VQIQMFQQVRVRVTTVRDEHSGKQKVQITLV 969

>RRP44_YEAST (Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
            RNA-processing protein 44) (Protein DIS3)
          Length = 1001

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -3

Query: 442  IVKIKANGFIVFVPKFGIEGPIYLTAKGDKGADWVVDEVHQKVTKPGTN 296
            ++K+  NG +V VPKFG+EG I L    +       DEV  K+T   TN
Sbjct: 918  VIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTN 966

>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
            RNA-processing protein 44) (DIS3 protein homolog)
          Length = 958

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = -3

Query: 460  VDTEARIVKIKANGFIVFVPKFGIEGPIYLTAKGDKGADWVVDE-------------VHQ 320
            V  EA I+ ++ N  +V +PK+G+EG ++   K       + D+             V  
Sbjct: 846  VSEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFD 905

Query: 319  KVTKPGTNISYAVLQSVMIHMEVVEPQ 239
            KV K    +  + LQ   I M +VEPQ
Sbjct: 906  KV-KVKIMLDSSNLQHQKIRMSLVEPQ 931

>TES_MOUSE (P47226) Testin (TES1/TES2)|
          Length = 423

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 125 RMDPGTMP*RKKGECTNVTIHLYICCSY---EGEL*LWAVRLRLDHFHMDHNTLQHSIAY 295
           R  P  +  + K   +  T +   CC +   EGE  ++A R   D        L H   +
Sbjct: 216 RHAPAAVASKDKSAESKKTQYSCYCCKHTTNEGEPAIYAERAGYDK-------LWHPACF 268

Query: 296 VCSRLGYFLVHLVYY 340
           +CS  G  LV ++Y+
Sbjct: 269 ICSTCGELLVDMIYF 283

>Y4505_VIBPA (Q87IV1) Putative hydrolase VPA0505 (EC 3.1.-.-)|
          Length = 248

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 391 IEGPIYLTAKGDKGADWVVDEVHQKVTKPGTNISY 287
           ++G I L    D+  DWV+   H+ V +P T   +
Sbjct: 80  VKGEIDLPLSSDQHLDWVIASFHEPVFRPATEAEH 114

>ASTE_PSEAE (O50177) Succinylglutamate desuccinylase (EC 3.1.-.-)|
          Length = 332

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 406 VPKFGIEGPIYLTAKGDKGADWVVDEVHQKVTKPGTNISYAVLQSVMI 263
           V  F    P YL A+   G  WVVDEV  ++  P   +   +   +++
Sbjct: 280 VANFTELSPGYLLAEDIGGTRWVVDEVGARIIFPNPRVKNGLRAGILV 327

>FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4)|
          Length = 705

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 254 FHMDHNTLQHSIAYVCSRLGYFLVHLVYYPVSPFVSLRRKIDGAFYAKLRYEDYETI 424
           FH  HN   HS +           H +YYP   + S +    G++Y  L+    ET+
Sbjct: 658 FHPHHNHQHHSTSS----------HRLYYPPGSYASQKYSQHGSYYPHLQQYGNETL 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,153,377
Number of Sequences: 219361
Number of extensions: 1326775
Number of successful extensions: 3231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)