>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 216 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 353
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 596 HCNAGYRSHPQHRYCVDVNECEAEPCGPGKGICMNTGGSYNCHCNR 641

>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1302

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 216 HDNYGSRSNTGHEDCAALSSLEPFPFALTIWLFLELYRSYRCHCTR 353
           H N G RS+  H  C  ++  E  P      + +    SY CHC R
Sbjct: 599 HCNPGYRSHPQHRYCVDVNECEAEPCGPGRGICMNTGGSYNCHCNR 644

>YJLA_BACSU (O34428) Hypothetical protein yjlA|
          Length = 324

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 170 MLYVLMFAFFFLLPPTVQKSSRACIWSSVLAYVHKITFHC*AVDIR 33
           +L  L FA  F+L   ++ S  + +WSS L ++  + F C  V +R
Sbjct: 8   ILASLFFAVTFILNRAMELSGGSWLWSSSLRFIFMVPFLCLIVIMR 53

>SDC4_RAT (P34901) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 202

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 296 LDYLAVPRALPKLQMPLHTLTNHLPEN 376
           LD    PR  P++  PL  L NH+PEN
Sbjct: 70  LDDTEEPRTFPEVISPLVPLDNHIPEN 96

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 93  PDTSSRRLLNRRRQKEKKSKH*YVQHDEERGR 188
           P+ + RRLL  RRQK+ K +   ++  +ERG+
Sbjct: 345 PEKACRRLLEGRRQKKTKKQKRLLRLQQERGK 376

>COQ5_MOUSE (Q9CXI0) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 431 RVCQKKGWKATSSCRQHDCSRGDDW 357
           RVC +  W+AT  CR   C R   W
Sbjct: 11  RVCGRGWWRATGHCRLPGCHRSWPW 35

>SDC4_MOUSE (O35988) Syndecan-4 precursor (SYND4) (Ryudocan core protein)|
          Length = 198

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 296 LDYLAVPRALPKLQMPLHTLTNHLPEN 376
           LD    PR  P++  PL  L NH+PEN
Sbjct: 67  LDDTEEPRPFPEVIEPLVPLDNHIPEN 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,571,466
Number of Sequences: 219361
Number of extensions: 1169749
Number of successful extensions: 2712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2712
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)