Clone Name | rbastl38c03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 ttcctcgagctctaccgaagctacagatgccactgca 348 |||||| | |||||| |||||||||||||||| |||| Sbjct: 29114508 ttcctcaatctctactgaagctacagatgccagtgca 29114472
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 ttcctcgagctctaccgaagctacagatgccactgca 348 |||||| | |||||| |||||||||||||||| |||| Sbjct: 74874 ttcctcaatctctactgaagctacagatgccagtgca 74838
>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence Length = 160118 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gaaccatttccttttgccttg 299 ||||||||||||||||||||| Sbjct: 85929 gaaccatttccttttgccttg 85949
>ref|XM_513613.1| PREDICTED: Pan troglodytes similar to KIAA0893 protein (LOC457082), mRNA Length = 3124 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2142 agctacagatgccactgcac 2123
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 aggccgtaagccgccaggcc 205 |||||||||||||||||||| Sbjct: 119940 aggccgtaagccgccaggcc 119921
>gb|AC010921.12| Drosophila melanogaster clone BACR15L12, complete sequence Length = 163466 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 cggctcagcagtggaaagta 63 |||||||||||||||||||| Sbjct: 62283 cggctcagcagtggaaagta 62264
>gb|AC012160.7| Drosophila melanogaster clone BACR06G02, complete sequence Length = 172069 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cggctcagcagtggaaagta 63 |||||||||||||||||||| Sbjct: 41423 cggctcagcagtggaaagta 41442
>ref|XM_864695.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 2 (LOC512354), mRNA Length = 4226 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2680 agctacagatgccactgcac 2661
>ref|XM_589861.2| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 1 (LOC512354), mRNA Length = 3883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2337 agctacagatgccactgcac 2318
>ref|XM_873788.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript variant 3 (LOC512354), mRNA Length = 4186 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2640 agctacagatgccactgcac 2621
>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence Length = 171059 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 tctcttgaaccatttccttttgcc 296 ||||||||||||||||||| |||| Sbjct: 71165 tctcttgaaccatttccttgtgcc 71142
>ref|NM_014969.3| Homo sapiens WD repeat domain 47 (WDR47), mRNA Length = 4259 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2685 agctacagatgccactgcac 2666
>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the TAF13 gene for TAF13 RNA polymerase II TATA box binding protein (TBP)-associated factor 18kDa, a RAN member RAS oncogene family (RAN) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of a novel gene (KIAA0893) and three CpG islands, complete sequence Length = 107685 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 3053 agctacagatgccactgcac 3072
>gb|BC034964.2| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714 IMAGE:4823902), complete cds Length = 4259 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2685 agctacagatgccactgcac 2666
>gb|BC039254.1| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:33742 IMAGE:5287954), complete cds Length = 4181 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2593 agctacagatgccactgcac 2574
>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 238147 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ctaaaacacttgaccagata 99 |||||||||||||||||||| Sbjct: 224012 ctaaaacacttgaccagata 224031
>emb|BX936335.6| Zebrafish DNA sequence from clone CH211-287C12 in linkage group 3, complete sequence Length = 62086 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 taatacgtacaacatgatga 175 |||||||||||||||||||| Sbjct: 8861 taatacgtacaacatgatga 8842
>dbj|AK074616.1| Homo sapiens cDNA FLJ90135 fis, clone HEMBB1000668 Length = 2375 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 824 agctacagatgccactgcac 805
>gb|AC022016.7| Homo sapiens chromosome 10 clone RP11-165M8, complete sequence Length = 163031 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tatgtccacggctcagcagtggaa 59 |||||||| ||||||||||||||| Sbjct: 55535 tatgtccagggctcagcagtggaa 55558
>ref|NG_004788.1| Homo sapiens cofilin pseudogene 1 (CFLP1) on chromosome 10 Length = 26979 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tatgtccacggctcagcagtggaa 59 |||||||| ||||||||||||||| Sbjct: 19501 tatgtccagggctcagcagtggaa 19524
>ref|NM_031320.1| Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 3 (Celsr3), mRNA Length = 11868 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 acttgaccagatacaagctctaga 110 |||||||||| ||||||||||||| Sbjct: 4977 acttgaccagctacaagctctaga 4954
>dbj|AB020700.1| Homo sapiens mRNA for KIAA0893 protein, partial cds Length = 4195 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agctacagatgccactgcac 349 |||||||||||||||||||| Sbjct: 2644 agctacagatgccactgcac 2625
>gb|AF118228.1|AF118228 Mus musculus Ksp-cadherin gene, promoter region and partial cds Length = 4884 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gctacagatgccactgcaca 350 |||||||||||||||||||| Sbjct: 3421 gctacagatgccactgcaca 3440
>gb|AE003504.4| Drosophila melanogaster chromosome X, section 56 of 74 of the complete sequence Length = 298703 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cggctcagcagtggaaagta 63 |||||||||||||||||||| Sbjct: 171640 cggctcagcagtggaaagta 171659
>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence Length = 204919 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gctacagatgccactgcaca 350 |||||||||||||||||||| Sbjct: 149203 gctacagatgccactgcaca 149184
>dbj|AB011528.1| Rattus norvegicus mRNA for MEGF2, complete cds Length = 11868 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 acttgaccagatacaagctctaga 110 |||||||||| ||||||||||||| Sbjct: 4977 acttgaccagctacaagctctaga 4954 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,316,641 Number of Sequences: 3902068 Number of extensions: 3316641 Number of successful extensions: 54324 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54270 Number of HSP's gapped (non-prelim): 54 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)