ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38c02 |
|---|---|
| Clone Library Name | barley_pub |
>GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)| Length = 639 Score = 30.8 bits (68), Expect = 0.94 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 97 PPTKEQHTGKQN----KTSYLLSSQVFKTKDYQVQYCAKRVQVAGHLPQKIY 240 P +K + G+ + K ++L S++F+T DY KR++ L KIY Sbjct: 152 PTSKVEVVGESSVTGTKVTFLADSEIFETLDYNFDVLEKRLKELAFLNDKIY 203
>TBX4_CANFA (Q861Q9) T-box transcription factor TBX4 (T-box protein 4)| Length = 554 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 97 PPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQVAGH----LPQKIY 240 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 105 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 156
>TBX4_HUMAN (P57082) T-box transcription factor TBX4 (T-box protein 4)| Length = 545 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 97 PPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQVAGH----LPQKIY 240 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 98 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 149
>TBX4_MOUSE (P70325) T-box transcription factor TBX4 (T-box protein 4)| Length = 552 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 97 PPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQVAGH----LPQKIY 240 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 103 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 154
>ARP6_YEAST (Q12509) Actin-like protein ARP6| Length = 438 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = +2 Query: 5 RHSLFYYCTDNSVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKY---SKQK 175 +H+L Y D + L +V N K+N PLP ++ + T L P + + Sbjct: 269 KHALEYVLPDFQTSFLGYVRNPRKENV----PLPEDAQIITLTDELFTIPETFFHPEISQ 324 Query: 176 TTKSNIVQ 199 TK IV+ Sbjct: 325 ITKPGIVE 332
>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1 Query: 73 KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQ 210 K+++ + P ++H K+NK SY SS T++ Q+ Y K +Q Sbjct: 445 KSQNQVTIPSQDQEHGHKENKISYQSSS----TEERQLNYGGKSIQ 486
>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +2 Query: 107 RNSTLANKTKHLICFPRKYSKQKTTKSNIVQKGYKL 214 RN TL N TKH +C ++ QK + QKG+ + Sbjct: 659 RNGTLCNSTKHRVC----WNGQKGGLEGLRQKGWSI 690
>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +2 Query: 107 RNSTLANKTKHLICFPRKYSKQKTTKSNIVQKGYKL 214 RN TL N TKH +C ++ QK + QKG+ + Sbjct: 659 RNGTLCNSTKHRVC----WNGQKGGLEGLRQKGWSI 690
>TRFR_CHICK (O93603) Thyrotropin-releasing hormone receptor (TRH-R)| (Thyroliberin receptor) Length = 395 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 109 EQHTG-KQNKTSYLLSSQVFKTKDYQV 186 E TG +QN T LLSSQ F T +YQV Sbjct: 2 ENGTGDEQNHTGLLLSSQEFVTAEYQV 28
>SEMG2_MACMU (Q95196) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 706 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 73 KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQ 210 K+++ + P ++H K+NK +Y SS T++ Q+ Y K +Q Sbjct: 569 KSQNQVTIPSQDQEHGHKENKIAYQSSS----TEERQLNYGGKSIQ 610
>HV3L_HUMAN (P01773) Ig heavy chain V-III region BUR| Length = 119 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 130 NKTSYLLSSQVFKTKDYQVQYCAKRVQVAG 219 +K + L + +T+D V YCAK + VAG Sbjct: 75 SKBTLYLZMKTLRTEDTAVYYCAKLIAVAG 104
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +2 Query: 5 RHSLFYYCTDNSVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHL 142 R L+ + ++ +PW + +++ S+ PLP T+A K K L Sbjct: 1066 RELLYLGTALSDMSGIPWPLERVEEDDPSIAPLPEFETVAKKQKEL 1111
>TBX3_CHICK (O73718) T-box transcription factor TBX3 (T-box protein 3)| (Fragment) Length = 414 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +1 Query: 97 PPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQVAG----HLPQKIY 240 PP K + TG K Y+L + D + ++ R VAG +P+++Y Sbjct: 136 PPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMY 187
>SEMG2_MACNE (Q5U7M9) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 73 KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQ 210 K+++ + P ++H K+NK SY SS T+ Q+ Y K +Q Sbjct: 445 KSQNQVTIPSQDQEHGHKENKISYQSSS----TEQRQLNYGRKSIQ 486
>SEMG2_MACFA (Q5U7N0) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 73 KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFKTKDYQVQYCAKRVQ 210 K+++ + P ++H K+NK +Y SS T++ Q+ Y K +Q Sbjct: 445 KSQNQVTIPSQDQEHGHKENKIAYQSSS----TEERQLNYGGKSIQ 486
>ATS15_HUMAN (Q8TE58) ADAMTS-15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 15) (ADAM-TS 15) (ADAM-TS15) Length = 950 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = +3 Query: 27 ALIIR*QFCHGWQTKQNKTPDPYTPYQGTAHWQTKQNILFAFLASIQNKRLPSPILCKKG 206 AL +R FC WQ K NK D + Y TA T+Q++ A + G Sbjct: 286 ALTLR-NFC-AWQKKLNKVSDKHPEYWDTAILFTRQDLCGATTCDTLG-------MADVG 336 Query: 207 TSCRPSTS 230 T C P S Sbjct: 337 TMCDPKRS 344
>SNX27_HUMAN (Q96L92) Sorting nexin-27| Length = 435 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -2 Query: 180 VVFCFEYLRG-KQIRCFVLFASVLFLGRGCRDQVFC 76 + FCFEY RG K+ R +F C ++VFC Sbjct: 391 MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFC 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,258,650 Number of Sequences: 219361 Number of extensions: 878947 Number of successful extensions: 2811 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2811 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
