>VH65_NPVAC (Q08539) Early 65 kDa protein|
          Length = 553

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 148 TLPCHLLLYQQFTESVNVKYTM 213
           T+PCH  LY  F E +N K  M
Sbjct: 418 TIPCHKYLYNDFVERLNFKSLM 439

>V233_FOWPV (Q9J502) Putative ankyrin repeat protein FPV233|
          Length = 512

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 303 LHYVVCHCKQVFAVQVLLETTNDVS 377
           LHY V +CK +  +++LLE   DV+
Sbjct: 271 LHYAVSYCKDIDVIKLLLERGVDVN 295

>PSF2_CAEEL (O62193) Probable DNA replication complex GINS protein PSF2|
          Length = 180

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 9   IWGYISVKTT*HCQVVAIQWQQFYKLKLVKAEKTK 113
           +W  I +K   +C+VVA QW    +LK +   +T+
Sbjct: 47  VWTAILMKRKHNCKVVAPQWMDVDELKKILTSETE 81

>RHAR_SALTY (P40865) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 282

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 386 WKTGNIISCFQQDLYSKNLLTMANNIV*PSSSDAFCQGVEHISDELYKERRAQ 228
           + T ++ +  ++ L  K +  +AN++  P + DAFCQ  +     L ++ RAQ
Sbjct: 164 YATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQ 216

>RHAR_SALTI (Q8Z2V5) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 282

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 386 WKTGNIISCFQQDLYSKNLLTMANNIV*PSSSDAFCQGVEHISDELYKERRAQ 228
           + T ++ +  ++ L  K +  +AN++  P + DAFCQ  +     L ++ RAQ
Sbjct: 164 YATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQ 216

>RHAR_SALPA (Q5PKG1) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 282

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 386 WKTGNIISCFQQDLYSKNLLTMANNIV*PSSSDAFCQGVEHISDELYKERRAQ 228
           + T ++ +  ++ L  K +  +AN++  P + DAFCQ  +     L ++ RAQ
Sbjct: 164 YATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQ 216

>RHAR_SALCH (Q57HG7) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 282

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 386 WKTGNIISCFQQDLYSKNLLTMANNIV*PSSSDAFCQGVEHISDELYKERRAQ 228
           + T ++ +  ++ L  K +  +AN++  P + DAFCQ  +     L ++ RAQ
Sbjct: 164 YATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQ 216

>QUEF_RICPR (Q9ZE74) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 273

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 304 SHHLVMHSVREWSTSQMNCTKKEGXNLV 221
           S+HL  + V  W+T +++C  K G  LV
Sbjct: 39  SNHLPFYGVDIWNTYEISCLNKNGKPLV 66

>DOCK5_HUMAN (Q9H7D0) Dedicator of cytokinesis protein 5 (Fragment)|
          Length = 804

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 17  LYQCEDNMTLPGRCNPMATILQTKTSEGREDKRGKENQNLHLKK----HCRVIFYCTNS 181
           + QCE N +  G  +     L TK  +  E  RG E   + L+K    HCR   Y ++S
Sbjct: 65  MMQCEFNFSGNGNFHMFENELITKLDQEVEGGRGDEQYKVLLEKLLLEHCRKHKYLSSS 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,600,175
Number of Sequences: 219361
Number of extensions: 956619
Number of successful extensions: 1980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)