ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 108 5e-24
2ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit... 30 3.0
3SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6... 29 5.1

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
            component Sec8)
          Length = 1053

 Score =  108 bits (271), Expect = 5e-24
 Identities = 51/81 (62%), Positives = 65/81 (80%)
 Frame = -2

Query: 460  ALEQALAAIPSIDSEAVQQRLDRVRTFYELLNLPFETLLGFIAEQEYLFSAKEYLSILKV 281
            A+EQA+AAIP ID E VQQ LDRVRT++ELLN+PFE LL FIAE + +F+  EY ++LKV
Sbjct: 973  AVEQAMAAIPYIDGETVQQNLDRVRTYFELLNMPFEALLAFIAEHDQMFTPTEYSNLLKV 1032

Query: 280  NVPGREIPMDAERRISQILGH 218
            NVPGR+ P DA+ R+ +IL H
Sbjct: 1033 NVPGRDTPSDAQSRLLEILSH 1053



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>ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit ALG14 (EC|
           2.4.1.-) (Asparagine linked glycosylation protein 14)
          Length = 232

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 400 LDRVRTFYELLNLP-FETLLGFIAEQEYLFSAKEYLSILKVNVPGREIPM 254
           L R RT  E + L  F T+   I+  ++L+   ++ SIL +N PG  +P+
Sbjct: 119 LHRARTVGESIILSVFSTVRSLISTIKHLYELPQFPSILLLNGPGTSVPL 168



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>SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
           (Isoleucine--tRNA ligase) (IleRS)
          Length = 1064

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = -2

Query: 427 IDSEAVQQRLDRVRTFYEL-----------LNLPFETLLGFIAEQEYLFSAK 305
           +D E V +R+ R++T  EL           L  P +TL+  +  +EYL  AK
Sbjct: 808 LDDETVLRRVKRMQTIIELARYVREQNNISLKTPLKTLIVILTNEEYLEDAK 859


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,588,865
Number of Sequences: 219361
Number of extensions: 923475
Number of successful extensions: 2336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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