ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
2ref|XM_481557.1| Oryza sativa (japonica cultivar-group), mRNA 244 2e-61
3gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30... 244 2e-61
4gb|AY107186.1| Zea mays PCO133868 mRNA sequence 216 5e-53
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
6dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
7emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in ... 46 0.10
8emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chrom... 44 0.40
9gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 44 0.40
10gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 44 0.40
11emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 44 0.40
12gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, compl... 42 1.6
13gb|AC102676.16| Mus musculus chromosome 14, clone RP23-266L19, c... 42 1.6
14gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 42 1.6
15gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map ... 42 1.6
16emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chro... 42 1.6
17gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, com... 42 1.6
18dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.6
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, comp... 42 1.6
21gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, comple... 42 1.6
22gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cance... 42 1.6
23dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathy... 42 1.6
25gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, com... 42 1.6
26emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chr... 42 1.6
27ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mR... 40 6.2
28gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, co... 40 6.2
29gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, com... 40 6.2
30ref|NM_007332.1| Homo sapiens transient receptor potential catio... 40 6.2
31gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, parti... 40 6.2
32gb|AY563104.1| Allium sativum floral meristem identity control p... 40 6.2
33gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, part... 40 6.2
34gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, comp... 40 6.2
35ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splici... 40 6.2
36gb|AC145145.2| Homo sapiens chromosome 5 clone RP11-14E21, compl... 40 6.2
37gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, comp... 40 6.2
38gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's ... 40 6.2
39emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chrom... 40 6.2
40emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chro... 40 6.2
41emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chr... 40 6.2
42emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein 40 6.2
43gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 6.2
44gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, comp... 40 6.2
45gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, com... 40 6.2
46emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chro... 40 6.2
47emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clo... 40 6.2
48gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, compl... 40 6.2
49gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map... 40 6.2
50gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, co... 40 6.2
51gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA seq... 40 6.2
52gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, com... 40 6.2
53gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 6.2
54dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
55dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
56emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Co... 40 6.2
57emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Co... 40 6.2
58emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Co... 40 6.2
59emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Co... 40 6.2
60emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Co... 40 6.2
61emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Co... 40 6.2
62emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Co... 40 6.2
63gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell... 40 6.2
64gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell... 40 6.2
65dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.2
66emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 40 6.2
67dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.2
68gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 6.2
69gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 6.2
70gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
71emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chr... 40 6.2
72emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 40 6.2
73gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2 
>dbj|AK070862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E23, full
            insert sequence
          Length = 3546

 Score =  248 bits (125), Expect = 1e-62
 Identities = 224/257 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 264
            |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 3272 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 3213

                                                                        
Query: 265  ctctaccaggtacattgacctttagtatgcttaagtattcttttgcagaaaataaatatt 324
            |||| ||||| || ||||||||||  | ||| ||||||||||||||||||||||||||||
Sbjct: 3212 ctcttccaggaacgttgacctttaacacgctcaagtattcttttgcagaaaataaatatt 3153

                                                                        
Query: 325  cctgttcagcaatgaacccaagcaaagtctcaaaaggcaggtttaatagctcatagaatg 384
            | ||||| ||||| || |||||||||| ||| |||||||  || || || || |||||||
Sbjct: 3152 catgttctgcaataaatccaagcaaagactcgaaaggcaaattcaagagttcgtagaatg 3093

                                                                        
Query: 385  tccgaacgcgatctaatctctgttggactgcctcactatcaatggaaggtatggctgcaa 444
            ||||||| ||||||| |||||||||||| || ||||| ||||| || ||||||||||| |
Sbjct: 3092 tccgaacacgatctattctctgttggacggcttcactgtcaattgagggtatggctgcca 3033

                             
Query: 445  gtgcctgttctagtgct 461
            | |||||||||||||||
Sbjct: 3032 gagcctgttctagtgct 3016
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>ref|XM_481557.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1278

 Score =  244 bits (123), Expect = 2e-61
 Identities = 216/247 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 274
            |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1278 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1219

                                                                        
Query: 275  tacattgacctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagc 334
             || ||||||||||  | ||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1218 aacgttgacctttaacacgctcaagtattcttttgcagaaaataaatattcatgttctgc 1159

                                                                        
Query: 335  aatgaacccaagcaaagtctcaaaaggcaggtttaatagctcatagaatgtccgaacgcg 394
            ||| || |||||||||| ||| |||||||  || || || || |||||||||||||| ||
Sbjct: 1158 aataaatccaagcaaagactcgaaaggcaaattcaagagttcgtagaatgtccgaacacg 1099

                                                                        
Query: 395  atctaatctctgttggactgcctcactatcaatggaaggtatggctgcaagtgcctgttc 454
            ||||| |||||||||||| || ||||| ||||| || ||||||||||| || ||||||||
Sbjct: 1098 atctattctctgttggacggcttcactgtcaattgagggtatggctgccagagcctgttc 1039

                   
Query: 455  tagtgct 461
            |||||||
Sbjct: 1038 tagtgct 1032
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>gb|AY224584.1| Oryza sativa (japonica cultivar-group) isolate 30858 unknown mRNA
          Length = 1704

 Score =  244 bits (123), Expect = 2e-61
 Identities = 216/247 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  ttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccagg 274
            |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1704 ttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatctctcttccagg 1645

                                                                        
Query: 275  tacattgacctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagc 334
             || ||||||||||  | ||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1644 aacgttgacctttaacacgctcaagtattcttttgcagaaaataaatattcatgttctgc 1585

                                                                        
Query: 335  aatgaacccaagcaaagtctcaaaaggcaggtttaatagctcatagaatgtccgaacgcg 394
            ||| || |||||||||| ||| |||||||  || || || || |||||||||||||| ||
Sbjct: 1584 aataaatccaagcaaagactcgaaaggcaaattcaagagttcgtagaatgtccgaacacg 1525

                                                                        
Query: 395  atctaatctctgttggactgcctcactatcaatggaaggtatggctgcaagtgcctgttc 454
            ||||| |||||||||||| || ||||| ||||| || ||||||||||| || ||||||||
Sbjct: 1524 atctattctctgttggacggcttcactgtcaattgagggtatggctgccagagcctgttc 1465

                   
Query: 455  tagtgct 461
            |||||||
Sbjct: 1464 tagtgct 1458
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>gb|AY107186.1| Zea mays PCO133868 mRNA sequence
          Length = 1187

 Score =  216 bits (109), Expect = 5e-53
 Identities = 202/233 (86%)
 Strand = Plus / Minus

                                                                       
Query: 222 cccaaaatctgtgagatacgtcgttcagcatccattggtatctctctaccaggtacattg 281
           ||||||||||||||||| |||||||||||||||   ||||| |||||||| || ||||||
Sbjct: 880 cccaaaatctgtgagatgcgtcgttcagcatccgcaggtatttctctacccggcacattg 821

                                                                       
Query: 282 acctttagtatgcttaagtattcttttgcagaaaataaatattcctgttcagcaatgaac 341
           |||||||| |  || | ||||||||| |||||||| |||||||| ||||| || ||||| 
Sbjct: 820 acctttagaacactcaggtattctttagcagaaaacaaatattcatgttctgcgatgaat 761

                                                                       
Query: 342 ccaagcaaagtctcaaaaggcaggtttaatagctcatagaatgtccgaacgcgatctaat 401
           |||||||||| |||||||||||  ||||| | ||||||||| || ||||||||||| |||
Sbjct: 760 ccaagcaaagactcaaaaggcaaatttaacaactcatagaacgttcgaacgcgatccaat 701

                                                                
Query: 402 ctctgttggactgcctcactatcaatggaaggtatggctgcaagtgcctgttc 454
           | |||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct: 700 cgctgttggactgcttcactatctattgaaggtatggctgcaagagcctgttc 648
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 205      ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 264
                |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 13733517 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 13733576

                                        
Query: 265      ctctaccaggtacattgaccttta 288
                |||| ||||| || ||||||||||
Sbjct: 13733577 ctcttccaggaacgttgaccttta 13733600



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 378      tagaatgtccgaacgcgatctaatctctgttggactgcctcactatcaatggaaggtatg 437
                |||||||||||||| ||||||| |||||||||||| || ||||| ||||| || ||||||
Sbjct: 13733848 tagaatgtccgaacacgatctattctctgttggacggcttcactgtcaattgagggtatg 13733907

                              
Query: 438      gctgcaagtgcctg 451
                ||||| || |||||
Sbjct: 13733908 gctgccagagcctg 13733921



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 303      tcttttgcagaaaataaatattcctgttcagcaatgaacccaagcaaag 351
                ||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 13733700 tcttttgcagaaaataaatattcatgttctgcaataaatccaagcaaag 13733748
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>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0406D01
          Length = 163932

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 205   ccaattcaatttaatggcccaaaatctgtgagatacgtcgttcagcatccattggtatct 264
             |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 47586 ccaattcgttttaatggcccaaaatctgagagatgcgtcgttcagcatccattggcatct 47645

                                     
Query: 265   ctctaccaggtacattgaccttta 288
             |||| ||||| || ||||||||||
Sbjct: 47646 ctcttccaggaacgttgaccttta 47669



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                         
Query: 378   tagaatgtccgaacgcgatctaatctctgttggactgcctcactatcaatggaaggtatg 437
             |||||||||||||| ||||||| |||||||||||| || ||||| ||||| || ||||||
Sbjct: 47917 tagaatgtccgaacacgatctattctctgttggacggcttcactgtcaattgagggtatg 47976

                           
Query: 438   gctgcaagtgcctg 451
             ||||| || |||||
Sbjct: 47977 gctgccagagcctg 47990



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 303   tcttttgcagaaaataaatattcctgttcagcaatgaacccaagcaaag 351
             ||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 47769 tcttttgcagaaaataaatattcatgttctgcaataaatccaagcaaag 47817
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>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1,
            complete sequence
          Length = 180744

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 106  aaaaccaaacagaaataacaaaa 128
            |||||||||||||||||||||||
Sbjct: 7326 aaaaccaaacagaaataacaaaa 7348
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>emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chromosome 9 Contains a
              pseudogene similar to part of tumor necrosis factor,
              alpha-induced protein 1 (endothelial) (TNFAIP1) (EDP1),
              complete sequence
          Length = 127029

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 76     ttacctacctatatgtagacat 97
              ||||||||||||||||||||||
Sbjct: 113190 ttacctacctatatgtagacat 113211
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 98     caaaagaaaaaaccaaacagaaataa 123
              ||||| ||||||||||||||||||||
Sbjct: 100755 caaaacaaaaaaccaaacagaaataa 100780
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 104     aaaaaaccaaacagaaataacaaaat 129
               |||||| |||||||||||||||||||
Sbjct: 1231254 aaaaaaacaaacagaaataacaaaat 1231229
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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
              sequence
          Length = 165720

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 106    aaaaccaaacagaaataacaaa 127
              ||||||||||||||||||||||
Sbjct: 137459 aaaaccaaacagaaataacaaa 137438
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>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence
          Length = 237273

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 105    aaaaaccaaacagaaataacaaaattaac 133
              |||||| ||||||||||||||||| ||||
Sbjct: 187808 aaaaacaaaacagaaataacaaaactaac 187836
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>gb|AC102676.16| Mus musculus chromosome 14, clone RP23-266L19, complete sequence
          Length = 190298

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 302  ttcttttgcagaaaataaata 322
            |||||||||||||||||||||
Sbjct: 8068 ttcttttgcagaaaataaata 8088
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 99     aaaagaaaaaaccaaacagaaataacaaa 127
              |||||||||| |||||||||||| |||||
Sbjct: 133245 aaaagaaaaatccaaacagaaattacaaa 133273
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>gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map X, complete sequence
          Length = 153728

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   taactacagctacaaagaaag 150
             |||||||||||||||||||||
Sbjct: 44419 taactacagctacaaagaaag 44439
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>emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chromosome 6, complete
              sequence
          Length = 149849

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    cagaaaataaatattcctgtt 330
              |||||||||||||||||||||
Sbjct: 145180 cagaaaataaatattcctgtt 145160
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>gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, complete sequence
          Length = 155084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 105   aaaaaccaaacagaaataacaaaattaac 133
             |||||| ||||||||||||||||| ||||
Sbjct: 75553 aaaaacaaaacagaaataacaaaactaac 75581
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>dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130320C01 product:unclassifiable, full
            insert sequence
          Length = 2644

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 99   aaaagaaaaaaccaaacagaaataacaaa 127
            |||||||||| |||||||||||| |||||
Sbjct: 1225 aaaagaaaaatccaaacagaaattacaaa 1253
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 104      aaaaaaccaaacagaaataacaaaa 128
                ||||| |||||||||||||||||||
Sbjct: 26566906 aaaaatccaaacagaaataacaaaa 26566882
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>gb|AC116098.3| Homo sapiens chromosome 3 clone CTD-2329B17, complete sequence
          Length = 120591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   aggaagatactgtgagacatc 174
             |||||||||||||||||||||
Sbjct: 87962 aggaagatactgtgagacatc 87942
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>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence
          Length = 151006

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 123    acaaaattaactacagctaca 143
              |||||||||||||||||||||
Sbjct: 112099 acaaaattaactacagctaca 112079
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>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155150

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    aggaagatactgtgagacatc 174
              |||||||||||||||||||||
Sbjct: 146837 aggaagatactgtgagacatc 146857
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>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0049H05
          Length = 161934

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 104   aaaaaaccaaacagaaataacaaaa 128
             ||||| |||||||||||||||||||
Sbjct: 40620 aaaaatccaaacagaaataacaaaa 40596
to top
>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons
             1-13
          Length = 31774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 104   aaaaaaccaaacagaaataacaaaattaa 132
             ||||||||||| ||||||||| |||||||
Sbjct: 29806 aaaaaaccaaaaagaaataaccaaattaa 29834
to top
>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence
          Length = 168884

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   ggtatggctgcaagtgcctgt 452
             |||||||||||||||||||||
Sbjct: 66215 ggtatggctgcaagtgcctgt 66235
to top
>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete
             sequence
          Length = 197632

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   taactacagctacaaagaaag 150
             |||||||||||||||||||||
Sbjct: 46849 taactacagctacaaagaaag 46869
to top
>ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mRNA, complete cds
          Length = 446

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 28  catcaaaagaaaaaaccaaa 47
to top
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   aaaaaccaaacagaaataacaaaa 128
             |||||||||||||||| |||||||
Sbjct: 44913 aaaaaccaaacagaaacaacaaaa 44936
to top
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ccattcaaaataccacaaat 46
             ||||||||||||||||||||
Sbjct: 29805 ccattcaaaataccacaaat 29786
to top
>ref|NM_007332.1| Homo sapiens transient receptor potential cation channel, subfamily
            A, member 1 (TRPA1), mRNA
          Length = 5190

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   gtagacatcaaaagaaaaaa 109
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
to top
>gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, partial cds,
           alternatively spliced
          Length = 570

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 aagaaaaaaccaaacagaaa 120
           ||||||||||||||||||||
Sbjct: 301 aagaaaaaaccaaacagaaa 320
to top
>gb|AY563104.1| Allium sativum floral meristem identity control protein gene,
           partial cds
          Length = 682

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 aagaaaaaaccaaacagaaa 120
           ||||||||||||||||||||
Sbjct: 321 aagaaaaaaccaaacagaaa 340
to top
>gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, partial cds
          Length = 506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 aagaaaaaaccaaacagaaa 120
           ||||||||||||||||||||
Sbjct: 238 aagaaaaaaccaaacagaaa 257
to top
>gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, complete sequence
          Length = 150263

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   agaaaataaatattcctgtt 330
             ||||||||||||||||||||
Sbjct: 86070 agaaaataaatattcctgtt 86051
to top
>ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splicing factor PRP17,
           putative (117.t00032) partial mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 aaacagaaataacaaaatta 131
           ||||||||||||||||||||
Sbjct: 520 aaacagaaataacaaaatta 501
to top
>gb|AC145145.2| Homo sapiens chromosome 5 clone RP11-14E21, complete sequence
          Length = 174962

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    agaaaataaatattcctgtt 330
              ||||||||||||||||||||
Sbjct: 148583 agaaaataaatattcctgtt 148564
to top
>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence
          Length = 176176

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ccattcaaaataccacaaat 46
              ||||||||||||||||||||
Sbjct: 133828 ccattcaaaataccacaaat 133809
to top
>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 241078

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tagacatcaaaagaaaaaac 110
            ||||||||||||||||||||
Sbjct: 8523 tagacatcaaaagaaaaaac 8542
to top
>emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chromosome 1 Contains a CpG
              island, complete sequence
          Length = 105641

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    tttgcagaaaataaatattc 325
              ||||||||||||||||||||
Sbjct: 100711 tttgcagaaaataaatattc 100730
to top
>emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chromosome 9 Contains the 5'
             end of the DAPK1 gene for death-associated protein kinase
             1, a ribosomal protein S29 (RPS29) pseudogene, part of a
             novel gene and a CpG island, complete sequence
          Length = 119811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   ttttgcagaaaataaatatt 324
             ||||||||||||||||||||
Sbjct: 44749 ttttgcagaaaataaatatt 44768
to top
>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3
             Contains part of the ABCC4 gene for ATP-binding cassette,
             sub-family C (CFTR/MRP), member 4, complete sequence
          Length = 182485

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   ctctgttggactgcctcact 421
             ||||||||||||||||||||
Sbjct: 38903 ctctgttggactgcctcact 38884
to top
>emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein
          Length = 5190

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   gtagacatcaaaagaaaaaa 109
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
to top
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
              sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    aaacagaaataacaaaattaacta 135
              |||||||||||||||| |||||||
Sbjct: 101685 aaacagaaataacaaatttaacta 101708
to top
>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence
          Length = 201279

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    aaagaaaaaaccaaacagaa 119
              ||||||||||||||||||||
Sbjct: 168463 aaagaaaaaaccaaacagaa 168444
to top
>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence
          Length = 175943

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    aaagaaaaaaccaaacagaa 119
              ||||||||||||||||||||
Sbjct: 111661 aaagaaaaaaccaaacagaa 111642
to top
>emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chromosome 11 Contains the
             3' end of the gene for a novel protein (C330012F17Rik,
             C130096N06Rik), the gene for a novel protein
             (2010316F05Rik), a novel gene, the Mtif2 gene for
             mitochondrial translational initiation factor 2, the
             Rps27a gene for ribosomal protein S27a, a ribosomal
             protein L7 (Rpl7) pseudogene, the gene for a novel protein
             (1700034F02Rik), a novel gene and a CpG island, complete
             sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   aaagaaaaaaccaaacagaaataa 123
             ||||| ||||||||||||||||||
Sbjct: 44196 aaagagaaaaccaaacagaaataa 44173
to top
>emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clone DKFZp468J165)
          Length = 2880

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agacatcaaaagaaaaaacc 111
            ||||||||||||||||||||
Sbjct: 1098 agacatcaaaagaaaaaacc 1117
to top
>gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, complete sequence
          Length = 125980

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   agaaaataaatattcctgtt 330
             ||||||||||||||||||||
Sbjct: 43473 agaaaataaatattcctgtt 43454
to top
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete
             sequence
          Length = 93868

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   cttttgcagaaaataaatat 323
             ||||||||||||||||||||
Sbjct: 27232 cttttgcagaaaataaatat 27213
to top
>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     gtagacatcaaaagaaaaaa 109
              ||||||||||||||||||||
Sbjct: 186011 gtagacatcaaaagaaaaaa 186030
to top
>gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA sequence
          Length = 383

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 22  catcaaaagaaaaaaccaaa 41
to top
>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence
          Length = 197785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     gtagacatcaaaagaaaaaa 109
              ||||||||||||||||||||
Sbjct: 115320 gtagacatcaaaagaaaaaa 115339
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
              sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ttcttttgcagaaaataaat 321
              ||||||||||||||||||||
Sbjct: 858137 ttcttttgcagaaaataaat 858118
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      aaacagaaataacaaaattaacta 135
                |||||||||||||||| |||||||
Sbjct: 16558557 aaacagaaataacaaatttaacta 16558534
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     aaataacaaaattaactaca 137
               ||||||||||||||||||||
Sbjct: 2061407 aaataacaaaattaactaca 2061388
to top
>emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL60ZB03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 417

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
to top
>emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL94ZA10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 408

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 13  catcaaaagaaaaaaccaaa 32
to top
>emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL81ZB11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 5   catcaaaagaaaaaaccaaa 24
to top
>emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL47ZC02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
to top
>emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL44ZE11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 416

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
to top
>emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL25ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
to top
>emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL17ZD01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 421

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  catcaaaagaaaaaaccaaa 114
           ||||||||||||||||||||
Sbjct: 20  catcaaaagaaaaaaccaaa 39
to top
>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163700

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   caaacagaaataacaaaatt 130
             ||||||||||||||||||||
Sbjct: 47077 caaacagaaataacaaaatt 47096
to top
>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178453

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   caaacagaaataacaaaatt 130
             ||||||||||||||||||||
Sbjct: 15642 caaacagaaataacaaaatt 15623
to top
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    catcaaaagaaaaaaccaaa 114
             ||||||||||||||||||||
Sbjct: 75863 catcaaaagaaaaaaccaaa 75882
to top
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaaagaaaaaaccaaacaga 118
             ||||||||||||||||||||
Sbjct: 39458 aaaagaaaaaaccaaacaga 39439
to top
>dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-699F16, complete
             sequence
          Length = 72000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaaagaaaaaaccaaacaga 118
             ||||||||||||||||||||
Sbjct: 19380 aaaagaaaaaaccaaacaga 19361
to top
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    aaagaaagccgaggaagata 162
              ||||||||||||||||||||
Sbjct: 937274 aaagaaagccgaggaagata 937293
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     ttcttttgcagaaaataaat 321
               ||||||||||||||||||||
Sbjct: 3372592 ttcttttgcagaaaataaat 3372611
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      aaacagaaataacaaaattaacta 135
                |||||||||||||||| |||||||
Sbjct: 16566798 aaacagaaataacaaatttaacta 16566775
to top
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete
             sequence
          Length = 209053

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   taagtattcttttgcagaaa 315
             ||||||||||||||||||||
Sbjct: 38185 taagtattcttttgcagaaa 38204
to top
>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
             sequence
          Length = 190964

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    atcaaaagaaaaaaccaaac 115
             ||||||||||||||||||||
Sbjct: 68962 atcaaaagaaaaaaccaaac 68943
to top
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaataacaaaattaactaca 137
             ||||||||||||||||||||
Sbjct: 28248 aaataacaaaattaactaca 28229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,182,065
Number of Sequences: 3902068
Number of extensions: 6182065
Number of successful extensions: 138855
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138417
Number of HSP's gapped (non-prelim): 438
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top