ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL365223.19| Human DNA sequence from clone RP11-55K22 on chr... 44 0.37
2emb|AL353651.11| Human DNA sequence from clone RP4-726F1 on chro... 44 0.37
3gb|AC139037.10| Mus musculus chromosome 5, clone RP23-310J14, co... 42 1.5
4emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, comp... 42 1.5
5gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome ... 42 1.5
6gb|AC122867.4| Mus musculus BAC clone RP23-146P6 from 8, complet... 42 1.5
7gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, comple... 42 1.5
8emb|CR660045.2|CNS0F89F Tetraodon nigroviridis full-length cDNA 42 1.5
9gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's ... 42 1.5
10emb|AL357892.13| Human DNA sequence from clone RP11-707H15 on ch... 42 1.5
11gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence 42 1.5
12gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete seq... 42 1.5
13gb|AC007233.7| Arabidopsis thaliana chromosome 2 clone T25M19 ma... 42 1.5
14gb|AC007170.6| Arabidopsis thaliana chromosome 2 clone T3P4 map ... 42 1.5
15emb|BX546494.9| Zebrafish DNA sequence from clone DKEYP-118A3 in... 42 1.5
16gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone ... 42 1.5
17gb|AC158152.4| Mus musculus chromosome 5, clone RP23-102E11, com... 42 1.5
18emb|AL772149.4| Mouse DNA sequence from clone RP23-108H7 on chro... 42 1.5
19gb|AC110510.6| Mus musculus chromosome 1, clone RP24-503F14, com... 40 5.7
20gb|AY814205.1| Schistosoma japonicum SJCHGC05820 protein mRNA, c... 40 5.7
21ref|XM_001004077.1| PREDICTED: Mus musculus hypothetical protein... 40 5.7
22gb|AC117246.3| Mus musculus BAC clone RP24-317G19 from 17, compl... 40 5.7
23gb|AC004879.2| Homo sapiens PAC clone RP4-755G17 from 7, complet... 40 5.7
24gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, com... 40 5.7
25gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequ... 40 5.7
26gb|AC110557.10| Mus musculus chromosome 5, clone RP23-250P16, co... 40 5.7
27gb|AC128736.4| Mus musculus chromosome 15 clone RP24-331C19, com... 40 5.7
28gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, co... 40 5.7
29gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, comple... 40 5.7
30gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, co... 40 5.7
31gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, comp... 40 5.7
32gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, co... 40 5.7
33gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete s... 40 5.7
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
35gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete s... 40 5.7
36gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, compl... 40 5.7
37dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
38gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, com... 40 5.7
39dbj|AP005902.2| Homo sapiens genomic DNA, chromosome 8p11.21, cl... 40 5.7
40dbj|AP006643.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.7
41emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chr... 40 5.7 
>emb|AL365223.19| Human DNA sequence from clone RP11-55K22 on chromosome 6 Contains the
            3' end of the PEX7 gene for peroxisomal biogenesis factor
            7 (PTS2R, RCDP1), a ribosomal protein L7a (RPL7A)
            pseudogene, a novel gene, the gene for a novel protein
            similar to 60s ribosomal protein L35a (RPL35A) (possible
            pseudogene), the 3' end of a novel gene and a CpG island,
            complete sequence
          Length = 116855

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 88   ctgaagaaaattaacaaaataaacat 113
            |||||||||| |||||||||||||||
Sbjct: 5311 ctgaagaaaaataacaaaataaacat 5286
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>emb|AL353651.11| Human DNA sequence from clone RP4-726F1 on chromosome 1p31.1-31.3
            Contains a novel gene, complete sequence
          Length = 92141

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 89   tgaagaaaattaacaaaataaa 110
            ||||||||||||||||||||||
Sbjct: 1410 tgaagaaaattaacaaaataaa 1431
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>gb|AC139037.10| Mus musculus chromosome 5, clone RP23-310J14, complete sequence
          Length = 194093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 327    ttcattagagacagcttgacctgaa 351
              |||| ||||||||||||||||||||
Sbjct: 185499 ttcactagagacagcttgacctgaa 185523
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>emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, complete sequence
          Length = 149672

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    attaacaaaataaacatggta 117
             |||||||||||||||||||||
Sbjct: 49895 attaacaaaataaacatggta 49875
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>gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome 1, complete sequence
          Length = 190712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tcaatagaaaactgtaaatat 36
             |||||||||||||||||||||
Sbjct: 47687 tcaatagaaaactgtaaatat 47667
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>gb|AC122867.4| Mus musculus BAC clone RP23-146P6 from 8, complete sequence
          Length = 180742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    agaaaattaacaaaataaaca 112
             |||||||||||||||||||||
Sbjct: 37883 agaaaattaacaaaataaaca 37903
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>gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, complete sequence
          Length = 179355

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    ctgaagaaaattaacaaaata 108
             |||||||||||||||||||||
Sbjct: 94725 ctgaagaaaattaacaaaata 94705
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>emb|CR660045.2|CNS0F89F Tetraodon nigroviridis full-length cDNA
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 90   gaagaaaattaacaaaataaa 110
            |||||||||||||||||||||
Sbjct: 1273 gaagaaaattaacaaaataaa 1293
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>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 241078

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    aaattaacaaaataaacatgg 115
             |||||||||||||||||||||
Sbjct: 16761 aaattaacaaaataaacatgg 16781
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>emb|AL357892.13| Human DNA sequence from clone RP11-707H15 on chromosome 6, complete
              sequence
          Length = 189876

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tcaatagaaaactgtaaatat 36
              |||||||||||||||||||||
Sbjct: 147449 tcaatagaaaactgtaaatat 147469
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>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence
          Length = 261093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    ctgaagaaaattaacaaaata 108
             |||||||||||||||||||||
Sbjct: 84124 ctgaagaaaattaacaaaata 84104
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>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 137377

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    attaacaaaataaacatggta 117
             |||||||||||||||||||||
Sbjct: 23789 attaacaaaataaacatggta 23769
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>gb|AC007233.7| Arabidopsis thaliana chromosome 2 clone T25M19 map ve013, complete
             sequence
          Length = 39858

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    gaagaaaattaacaaaataaa 110
             |||||||||||||||||||||
Sbjct: 38770 gaagaaaattaacaaaataaa 38790
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>gb|AC007170.6| Arabidopsis thaliana chromosome 2 clone T3P4 map mi310, complete
            sequence
          Length = 78568

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 90   gaagaaaattaacaaaataaa 110
            |||||||||||||||||||||
Sbjct: 6513 gaagaaaattaacaaaataaa 6533
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>emb|BX546494.9| Zebrafish DNA sequence from clone DKEYP-118A3 in linkage group 1,
             complete sequence
          Length = 174501

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    agaaaattaacaaaataaaca 112
             |||||||||||||||||||||
Sbjct: 46457 agaaaattaacaaaataaaca 46437
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>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence
          Length = 220811

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    ctgaagaaaattaacaaaata 108
             |||||||||||||||||||||
Sbjct: 83496 ctgaagaaaattaacaaaata 83476
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>gb|AC158152.4| Mus musculus chromosome 5, clone RP23-102E11, complete sequence
          Length = 220102

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 327   ttcattagagacagcttgacctgaa 351
             |||| ||||||||||||||||||||
Sbjct: 67249 ttcactagagacagcttgacctgaa 67273
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>emb|AL772149.4| Mouse DNA sequence from clone RP23-108H7 on chromosome 2, complete
              sequence
          Length = 196676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     agaaaattaacaaaataaaca 112
              |||||||||||||||||||||
Sbjct: 187394 agaaaattaacaaaataaaca 187414
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>gb|AC110510.6| Mus musculus chromosome 1, clone RP24-503F14, complete sequence
          Length = 198372

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    agcttgatctgaagacacag 250
              ||||||||||||||||||||
Sbjct: 162113 agcttgatctgaagacacag 162132
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>gb|AY814205.1| Schistosoma japonicum SJCHGC05820 protein mRNA, complete cds
          Length = 610

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 64 gaccaacaggaaattgaagg 83
          ||||||||||||||||||||
Sbjct: 97 gaccaacaggaaattgaagg 78
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>ref|XM_001004077.1| PREDICTED: Mus musculus hypothetical protein LOC672498, transcript
           variant 2 (LOC672498), mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 acctgaagacacaggtgcgtgaac 368
           ||||||||||||||||| ||||||
Sbjct: 49  acctgaagacacaggtgagtgaac 26
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>gb|AC117246.3| Mus musculus BAC clone RP24-317G19 from 17, complete sequence
          Length = 174227

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aactgtaaatatcaggtttt 44
             ||||||||||||||||||||
Sbjct: 62972 aactgtaaatatcaggtttt 62991
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>gb|AC004879.2| Homo sapiens PAC clone RP4-755G17 from 7, complete sequence
          Length = 134904

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aagaaaattaacaaaataaa 110
             ||||||||||||||||||||
Sbjct: 58067 aagaaaattaacaaaataaa 58048
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>gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, complete sequence
          Length = 267946

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     aagaaaattaacaaaataaa 110
              ||||||||||||||||||||
Sbjct: 164951 aagaaaattaacaaaataaa 164932
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>gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequence
          Length = 85060

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aaaattaacaaaataaacat 113
             ||||||||||||||||||||
Sbjct: 10451 aaaattaacaaaataaacat 10432
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>gb|AC110557.10| Mus musculus chromosome 5, clone RP23-250P16, complete sequence
          Length = 221232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     aagaaaattaacaaaataaa 110
              ||||||||||||||||||||
Sbjct: 220864 aagaaaattaacaaaataaa 220845
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>gb|AC128736.4| Mus musculus chromosome 15 clone RP24-331C19, complete sequence
          Length = 161710

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    tgaagaaaattaacaaaataaaca 112
             |||||||||||| |||||||||||
Sbjct: 98935 tgaagaaaattaccaaaataaaca 98912
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>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence
          Length = 149148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     gaaaattaacaaaataaaca 112
              ||||||||||||||||||||
Sbjct: 116614 gaaaattaacaaaataaaca 116595
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>gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, complete sequence
          Length = 173960

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tgaagaaaattaacaaaata 108
              ||||||||||||||||||||
Sbjct: 121264 tgaagaaaattaacaaaata 121245
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>gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, complete sequence
          Length = 171191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   acctgaagacacaggtgcgtgaac 368
             ||||||||||||||||| ||||||
Sbjct: 86386 acctgaagacacaggtgagtgaac 86409
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>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence
          Length = 180765

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     gaaaattaacaaaataaaca 112
              ||||||||||||||||||||
Sbjct: 177003 gaaaattaacaaaataaaca 176984
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>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   aaaattaacaaaataaacat 113
            ||||||||||||||||||||
Sbjct: 9320 aaaattaacaaaataaacat 9301
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>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence
          Length = 151308

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaaattaacaaaataaacat 113
             ||||||||||||||||||||
Sbjct: 84783 aaaattaacaaaataaacat 84802
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 85       tgcctgaagaaaattaacaaaata 108
                |||||||||| |||||||||||||
Sbjct: 30312494 tgcctgaagagaattaacaaaata 30312517
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>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence
          Length = 263876

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     aggttgcctgaagaaaatta 100
              ||||||||||||||||||||
Sbjct: 153992 aggttgcctgaagaaaatta 154011
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>gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, complete sequence
          Length = 143756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tgaagaaaattaacaaaata 108
             ||||||||||||||||||||
Sbjct: 21405 tgaagaaaattaacaaaata 21424
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>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1121A12
          Length = 138796

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     tgcctgaagaaaattaacaaaata 108
              |||||||||| |||||||||||||
Sbjct: 113411 tgcctgaagagaattaacaaaata 113434
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>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence
          Length = 194339

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 agcttgatctgaagacacag 250
           ||||||||||||||||||||
Sbjct: 422 agcttgatctgaagacacag 441
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>dbj|AP005902.2| Homo sapiens genomic DNA, chromosome 8p11.21, clone: KB1582A10,
             complete sequence
          Length = 149577

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tgaagaaaattaacaaaata 108
             ||||||||||||||||||||
Sbjct: 74697 tgaagaaaattaacaaaata 74678
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>dbj|AP006643.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34A19, TM0249,
             complete sequence
          Length = 111706

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aatagaaaactgtaaatatc 37
             ||||||||||||||||||||
Sbjct: 72808 aatagaaaactgtaaatatc 72827
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>emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chromosome 4, complete
              sequence
          Length = 213495

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gagacagcttgacctgaaga 353
              ||||||||||||||||||||
Sbjct: 160762 gagacagcttgacctgaaga 160743


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,130,967
Number of Sequences: 3902068
Number of extensions: 4130967
Number of successful extensions: 86203
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86064
Number of HSP's gapped (non-prelim): 139
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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