ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ANFY1_MOUSE (Q810B6) Ankyrin repeat and FYVE domain-containing p... 31 1.4
2ANFY1_HUMAN (Q9P2R3) Ankyrin repeat and FYVE domain-containing p... 30 2.3
3YFEO_SHIFL (P59585) Putative ion-transport protein yfeO 29 5.2
4YFEO_ECOLI (P67729) Putative ion-transport protein yfeO 29 5.2
5YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO 29 5.2
6YFEO_ECO57 (P67730) Putative ion-transport protein yfeO 29 5.2

>ANFY1_MOUSE (Q810B6) Ankyrin repeat and FYVE domain-containing protein 1|
           (Ankyrin repeats hooked to a zinc finger motif)
          Length = 1169

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 VLAASSSQWKIGMLQTTETLDLPPAAPE 323
           VLAA S  W +  L +TE +DL  A PE
Sbjct: 85  VLAARSDSWSLANLSSTEEIDLSDANPE 112



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>ANFY1_HUMAN (Q9P2R3) Ankyrin repeat and FYVE domain-containing protein 1|
           (Ankyrin repeats hooked to a zinc finger motif)
          Length = 1169

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 240 VLAASSSQWKIGMLQTTETLDLPPAAPE 323
           VLAA S  W +  L +T+ LDL  A PE
Sbjct: 85  VLAARSDSWSLANLSSTKELDLSDANPE 112



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>YFEO_SHIFL (P59585) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  LQFSQ*NVGPDPSCEP 108
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECOLI (P67729) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  LQFSQ*NVGPDPSCEP 108
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  LQFSQ*NVGPDPSCEP 108
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECO57 (P67730) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  LQFSQ*NVGPDPSCEP 108
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,086,146
Number of Sequences: 219361
Number of extensions: 1247409
Number of successful extensions: 2503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2503
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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