ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38b08 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 74.3 bits (181), Expect = 1e-13 Identities = 32/40 (80%), Positives = 38/40 (95%) Frame = -1 Query: 441 DVTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 DVT+TT+ GKSFTC +RFDTEVELAY+N+GGILPYVIRN+ Sbjct: 856 DVTVTTDSGKSFTCTVRFDTEVELAYFNNGGILPYVIRNL 895
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 70.9 bits (172), Expect = 1e-12 Identities = 31/40 (77%), Positives = 36/40 (90%) Frame = -1 Query: 441 DVTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 DVT+ T +GKSFTC LRFDTEVELAY++HGGIL YVIRN+ Sbjct: 856 DVTVVTNNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNL 895
>ACOC_SOLTU (O04916) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) (Fragment) Length = 616 Score = 70.9 bits (172), Expect = 1e-12 Identities = 31/40 (77%), Positives = 36/40 (90%) Frame = -1 Query: 441 DVTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 DVT+ T+ GKSFTCI+RFDTEVELAY+NHGGIL YVIR + Sbjct: 574 DVTVQTDTGKSFTCIVRFDTEVELAYFNHGGILQYVIRQL 613
>ACOC_CUCMC (Q42669) Aconitase (EC 4.2.1.3) (Aconitate hydratase) (Citrate| hydro-lyase) (Fragment) Length = 764 Score = 69.3 bits (168), Expect = 4e-12 Identities = 30/40 (75%), Positives = 36/40 (90%) Frame = -1 Query: 441 DVTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 DV + T+ GKSF+CILRFDTEVELAY++HGGIL YVIRN+ Sbjct: 720 DVAVVTDTGKSFSCILRFDTEVELAYFDHGGILQYVIRNL 759
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/40 (55%), Positives = 31/40 (77%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 V I + GK+F ++RFDT+VEL Y+++GGIL Y+IR MA Sbjct: 849 VQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKMA 888
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/40 (55%), Positives = 31/40 (77%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 V I + GK+F ++RFDT+VEL Y+++GGIL Y+IR MA Sbjct: 849 VQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKMA 888
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = -1 Query: 441 DVTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 ++ I + GK+F I+RFDT+VEL Y+++GGIL Y+IR MA Sbjct: 848 NIQIKLDTGKTFHAIMRFDTDVELTYFHNGGILNYMIRKMA 888
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 49.3 bits (116), Expect = 4e-06 Identities = 21/40 (52%), Positives = 30/40 (75%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 V + + GK+F ++RFDT+VEL Y ++GGIL Y+IR MA Sbjct: 849 VQVKLDTGKTFQAVIRFDTDVELTYLHNGGILNYMIRKMA 888
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 49.3 bits (116), Expect = 4e-06 Identities = 21/40 (52%), Positives = 30/40 (75%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 V + + GK+F ++RFDT+VEL Y+ +GGIL Y+IR MA Sbjct: 849 VQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 888
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/39 (51%), Positives = 26/39 (66%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 + + +G F I RFDTEVEL YY +GGIL Y+IR + Sbjct: 847 IDVNVSNGSVFQVICRFDTEVELTYYRNGGILQYMIRKL 885
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRNMAGAQK 307 VT T E+G F ++R DT E YY HGGIL YV+R MA + K Sbjct: 894 VTATKENGDVVEFDAVVRIDTPGEADYYRHGGILQYVLRQMAASSK 939
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 43.5 bits (101), Expect = 2e-04 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Frame = -1 Query: 441 DVTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 +VT E+G+ +F I+RFD+ VEL YY HGGIL V+RN Sbjct: 857 NVTAKKENGEIINFKAIVRFDSLVELDYYRHGGILQMVLRN 897
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 43.5 bits (101), Expect = 2e-04 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Frame = -1 Query: 441 DVTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 +VT E+G+ +F I+RFD+ VEL YY HGGIL V+RN Sbjct: 857 NVTAKKENGEIINFKAIVRFDSLVELDYYRHGGILQMVLRN 897
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = -1 Query: 438 VTITTEDGKS--FTCILRFDTEVELAYYNHGGILPYVIRNMAGA 313 VT T E+G+ F ++R DT E Y+ HGGIL YV+R MA + Sbjct: 894 VTATKENGEKVEFDAVVRIDTPGEADYFRHGGILQYVLRQMAAS 937
>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)| Length = 934 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -1 Query: 438 VTITTEDGKS--FTCILRFDTEVELAYYNHGGILPYVIRNMAGA 313 VT T E G F ++R DT E YY +GGIL YV+RNM A Sbjct: 891 VTATKESGDQVEFDAVVRIDTPGEADYYRNGGILQYVLRNMINA 934
>ACON_BACSU (P09339) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 908 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIR 328 V EDG +F ++RFD+EVE+ YY HGGIL V+R Sbjct: 864 VRAINEDGNVTTFEAVVRFDSEVEIDYYRHGGILQMVLR 902
>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)| (Aconitase 1) Length = 890 Score = 42.0 bits (97), Expect = 7e-04 Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -1 Query: 438 VTITTEDGKS--FTCILRFDTEVELAYYNHGGILPYVIRNM 322 VT+T DG C R DT EL YY + GIL YVIRNM Sbjct: 848 VTLTRADGSQEVVPCRCRIDTATELTYYQNDGILHYVIRNM 888
>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 888 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Frame = -1 Query: 438 VTITTEDG-KSFTCILRFDTEVELAYYNHGGILPYVIR 328 V T+++G K F +LRFD + ++ YY +GGILP V+R Sbjct: 845 VKATSKEGTKEFQVLLRFDADADIRYYQNGGILPMVVR 882
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -1 Query: 438 VTITTEDGK--SFTCILRFDTEVELAYYNHGGILPYVIRN 325 VT +DG F ++RFD+ VE+ YY HGGIL V+RN Sbjct: 858 VTAKKQDGDLVEFDAMVRFDSLVEMDYYRHGGILQMVLRN 897
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -1 Query: 438 VTITTEDGKS--FTCILRFDTEVELAYYNHGGILPYVIRNM 322 VT T E+G+ F + R DT E YY +GGIL +V+RNM Sbjct: 892 VTATKENGEKIEFDAVTRIDTPGEADYYRNGGILQFVLRNM 932
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 39.7 bits (91), Expect = 0.003 Identities = 17/33 (51%), Positives = 21/33 (63%) Frame = -1 Query: 420 DGKSFTCILRFDTEVELAYYNHGGILPYVIRNM 322 D F ++R DT E YY +GGIL YV+RNM Sbjct: 925 DAAEFDAVVRIDTPGEADYYRNGGILQYVLRNM 957
>IREB2_RAT (Q62751) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 38.9 bits (89), Expect = 0.006 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIR 328 + I T GK F+ I F+ +VE+ Y HGG+L +V R Sbjct: 924 LNIKTSTGKEFSVIAAFENDVEITLYKHGGLLNFVAR 960
>IREB2_HUMAN (P48200) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 38.1 bits (87), Expect = 0.010 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 + I T GK F+ I F+ +VE+ Y HGG+L +V R + Sbjct: 924 LNIQTSTGKVFSVIASFEDDVEITLYKHGGLLNFVARKFS 963
>ACON_LEGPH (P37032) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) (Major iron-containing protein) (MICP) (IP210) Length = 891 Score = 37.7 bits (86), Expect = 0.013 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = -1 Query: 438 VTITTEDG--KSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 VTI +DG + + R DT EL YY +GGIL YV+R ++ Sbjct: 849 VTIERQDGDIEKIETLCRIDTADELEYYKNGGILQYVLRKIS 890
>IREB2_MOUSE (Q811J3) Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron| regulatory protein 2) (IRP2) Length = 963 Score = 37.4 bits (85), Expect = 0.017 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 438 VTITTEDGKSFTCILRFDTEVELAYYNHGGILPYVIR 328 + I T GK F+ I F +VE+ Y HGG+L +V R Sbjct: 924 LNIKTSTGKEFSVIASFANDVEITLYKHGGLLNFVAR 960
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -1 Query: 432 ITTEDG--KSFTCILRFDTEVELAYYNHGGILPYVIRNMA 319 I + DG + + + R DT EL YY +GGIL YV+R +A Sbjct: 866 IVSGDGSLQRVSLLCRIDTLDELDYYRNGGILHYVLRKLA 905
>VPA_BP186 (P41064) Replication gene A protein (GpA)| Length = 694 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/72 (22%), Positives = 30/72 (41%) Frame = +1 Query: 184 FIFGLFIRPQHNEQTLDVHGGTNKTAMPPSRSKRVCGRVRLFLSSCHVADYIGQDASMVV 363 F+ GL + + + + A P R + R+R F + C+ Y+G+ ++ Sbjct: 265 FLKGLDLEDEEGNRISLIEKYDGSVANPAIRRCELMARIRGFENICNELGYVGEFYTLTA 324 Query: 364 VGQLHLCVKAKY 399 + H KA Y Sbjct: 325 PSKYHATTKAGY 336
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 97 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 234 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -2 Query: 323 WQELRNRRTRPHTLFDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQ 153 +++ R R FD D A+ + V PWT V C G M+ I + + LA A Sbjct: 906 YEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAM 965 Query: 152 VDLGG 138 LGG Sbjct: 966 NRLGG 970
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 290 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 171 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,155,663 Number of Sequences: 219361 Number of extensions: 1494900 Number of successful extensions: 3571 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3571 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
