ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016334.1| Zea mays clone Contig167 mRNA sequence 111 2e-21
2gb|BT024088.1| Zea mays clone EL01N0553G09 mRNA sequence 111 2e-21
3gb|AY104770.1| Zea mays PCO074909 mRNA sequence 111 2e-21
4ref|XM_480473.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
5dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
6ref|NM_126589.2| Arabidopsis thaliana RNA binding / aconitate hy... 66 1e-07
7gb|BT008809.1| Arabidopsis thaliana At2g05710 gene, complete cds 66 1e-07
8gb|AY136414.1| Arabidopsis thaliana cytoplasmic aconitate hydrat... 66 1e-07
9dbj|AK222094.1| Arabidopsis thaliana mRNA for cytoplasmic aconit... 66 1e-07
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12dbj|AK067183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
13dbj|AK061677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14emb|X97012.1|STRNAAAH S.tuberosum mRNA for aconitase/aconitate h... 58 3e-05
15dbj|AB236788.1| Trifolium pratense RNA for putative cytoplasmic ... 58 3e-05
16gb|AF194945.1|AF194945 Nicotiana tabacum cytosolic aconitase (AC... 58 3e-05
17gb|AY104037.1| Zea mays PCO139346 mRNA sequence 54 4e-04
18gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.006
20gb|AY250115.1| Lycopersicon pennellii aconitase mRNA, partial cds 50 0.006
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
22gb|AY250116.1| Lycopersicon pennellii aconitase mRNA, partial cds 50 0.006
23ref|NM_119749.3| Arabidopsis thaliana RNA binding / aconitate hy... 46 0.096
24emb|X82839.1|ATACON A.thaliana mRNA for aconitase (ZAPII) 46 0.096
25gb|AY062772.1| Arabidopsis thaliana Unknown protein (At4g35830; ... 46 0.096
26gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9... 42 1.5
27emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 i... 42 1.5
28gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 5.9
29gb|AC102087.12| Mus musculus chromosome 13, clone RP23-166D15, c... 40 5.9
30emb|BX914212.8| Zebrafish DNA sequence from clone CH211-105P7 in... 40 5.9
31gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.9
32emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, co... 40 5.9
33gb|AC091135.9| Homo sapiens chromosome 18, clone RP11-289E15, co... 40 5.9
34gb|AC146884.3| Callithrix jacchus clone CH259-252N7, complete se... 40 5.9
35emb|BX936464.7| Zebrafish DNA sequence from clone DKEY-246O4 in ... 40 5.9
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
37dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
38emb|BX005271.9| Zebrafish DNA sequence from clone CH211-145F15 i... 40 5.9
39emb|AL954331.8| Zebrafish DNA sequence from clone CH211-79E4 in ... 40 5.9
40emb|BX323582.13| Zebrafish DNA sequence from clone CH211-143E19 ... 40 5.9
41gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M1... 40 5.9
42gb|AC150597.4| Aotus nancymaae clone CH258-191N23, complete sequ... 40 5.9 
>gb|BT016334.1| Zea mays clone Contig167 mRNA sequence
          Length = 1269

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                       
Query: 318 ctgccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactcca 377
           |||||| ||||||||| ||||| || |||||||||||||||||| |||| |||| |||||
Sbjct: 879 ctgccaagttgcggatgacataagggaggatgcctccatggttgaagtacgccagctcca 820

                                                   
Query: 378 cctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
           |||| |||||||||||||  ||||||||||| ||||||||
Sbjct: 819 cctcagtgtcaaagcgaacgatgcaagtgaaagatttccc 780
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>gb|BT024088.1| Zea mays clone EL01N0553G09 mRNA sequence
          Length = 1988

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                        
Query: 318  ctgccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactcca 377
            |||||| ||||||||| ||||| || |||||||||||||||||| |||| |||| |||||
Sbjct: 1636 ctgccaagttgcggatgacataagggaggatgcctccatggttgaagtacgccagctcca 1577

                                                    
Query: 378  cctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
            |||| |||||||||||||  ||||||||||| ||||||||
Sbjct: 1576 cctcagtgtcaaagcgaacgatgcaagtgaaagatttccc 1537
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>gb|AY104770.1| Zea mays PCO074909 mRNA sequence
          Length = 3628

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                        
Query: 318  ctgccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactcca 377
            |||||| ||||||||| ||||| || |||||||||||||||||| |||| |||| |||||
Sbjct: 3024 ctgccaagttgcggatgacataagggaggatgcctccatggttgaagtacgccagctcca 2965

                                                    
Query: 378  cctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
            |||| |||||||||||||  ||||||||||| ||||||||
Sbjct: 2964 cctcagtgtcaaagcgaacgatgcaagtgaaagatttccc 2925
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>ref|XM_480473.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2697

 Score =  103 bits (52), Expect = 5e-19
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                        
Query: 320  gccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactccacc 379
            |||| ||||||||| || || || |||||||||||||||||| |||| ||||  ||||||
Sbjct: 2687 gccaggttgcggatgacgtatgggaggatgcctccatggttgaagtatgccagttccacc 2628

                                                    
Query: 380  tctgtgtcaaagcgaagtatgcaagtgaaggatttcccgt 419
            |||||||||||||||||  | |||||||||||||||||||
Sbjct: 2627 tctgtgtcaaagcgaagagtacaagtgaaggatttcccgt 2588
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>dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H03, full
           insert sequence
          Length = 514

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 gccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactccacc 379
           |||| ||||||||| || || || |||||||||||||||||| |||| ||||  ||||||
Sbjct: 73  gccaggttgcggatgacgtatgggaggatgcctccatggttgaagtatgccagttccacc 14

                        
Query: 380 tctgtgtcaaagc 392
           |||||||||||||
Sbjct: 13  tctgtgtcaaagc 1
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>ref|NM_126589.2| Arabidopsis thaliana RNA binding / aconitate hydratase/ hydro-lyase/
            iron ion binding / lyase AT2G05710 mRNA, complete cds
          Length = 3493

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 347  atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
            ||||||||||||||  |||| ||||| |||||||||||||| ||||| | | ||||||||
Sbjct: 3128 atgcctccatggttaaagtatgccaattccacctctgtgtcgaagcggactgtgcaagtg 3069

                         
Query: 407  aaggatttcccgt 419
            || ||||| ||||
Sbjct: 3068 aaagattttccgt 3056
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>gb|BT008809.1| Arabidopsis thaliana At2g05710 gene, complete cds
          Length = 2973

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 347  atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
            ||||||||||||||  |||| ||||| |||||||||||||| ||||| | | ||||||||
Sbjct: 2936 atgcctccatggttaaagtatgccaattccacctctgtgtcgaagcggactgtgcaagtg 2877

                         
Query: 407  aaggatttcccgt 419
            || ||||| ||||
Sbjct: 2876 aaagattttccgt 2864
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>gb|AY136414.1| Arabidopsis thaliana cytoplasmic aconitate hydratase (At2g05710)
            mRNA, complete cds
          Length = 3372

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 347  atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
            ||||||||||||||  |||| ||||| |||||||||||||| ||||| | | ||||||||
Sbjct: 3102 atgcctccatggttaaagtatgccaattccacctctgtgtcgaagcggactgtgcaagtg 3043

                         
Query: 407  aaggatttcccgt 419
            || ||||| ||||
Sbjct: 3042 aaagattttccgt 3030
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>dbj|AK222094.1| Arabidopsis thaliana mRNA for cytoplasmic aconitate hydratase,
           partial cds, clone: RAFL22-86-H10
          Length = 1232

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 347 atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
           ||||||||||||||  |||| ||||| |||||||||||||| ||||| | | ||||||||
Sbjct: 952 atgcctccatggttaaagtatgccaattccacctctgtgtcgaagcggactgtgcaagtg 893

                        
Query: 407 aaggatttcccgt 419
           || ||||| ||||
Sbjct: 892 aaagattttccgt 880
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                          
Query: 377     acctctgtgtcaaagcgaagtatgcaagtgaaggatttcccgt 419
               ||||||||||||||||||||  | |||||||||||||||||||
Sbjct: 5321948 acctctgtgtcaaagcgaagagtacaagtgaaggatttcccgt 5321990



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                           
Query: 320     gccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactccacc 379
               |||| ||||||||| || || || |||||||||||||||||| |||| ||||  ||||||
Sbjct: 5321761 gccaggttgcggatgacgtatgggaggatgcctccatggttgaagtatgccagttccacc 5321820

                
Query: 380     t 380
               |
Sbjct: 5321821 t 5321821
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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 377    acctctgtgtcaaagcgaagtatgcaagtgaaggatttcccgt 419
              ||||||||||||||||||||  | |||||||||||||||||||
Sbjct: 113536 acctctgtgtcaaagcgaagagtacaagtgaaggatttcccgt 113578



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                          
Query: 320    gccatgttgcggattacatagggcaggatgcctccatggttgtagtaggccaactccacc 379
              |||| ||||||||| || || || |||||||||||||||||| |||| ||||  ||||||
Sbjct: 113349 gccaggttgcggatgacgtatgggaggatgcctccatggttgaagtatgccagttccacc 113408

               
Query: 380    t 380
              |
Sbjct: 113409 t 113409
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>dbj|AK067183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095L01, full
            insert sequence
          Length = 3231

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 347  atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
            ||||| |||| || |||||| || | ||||||||| |||||||| |||||| ||||||||
Sbjct: 2952 atgccaccattgtcgtagtatgcaagctccacctcagtgtcaaatcgaagtgtgcaagtg 2893

                       
Query: 407  aaggatttccc 417
            ||||| |||||
Sbjct: 2892 aaggacttccc 2882
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>dbj|AK061677.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H07, full
           insert sequence
          Length = 1184

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 347 atgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtg 406
           ||||| |||| || |||||| || | ||||||||| |||||||| |||||| ||||||||
Sbjct: 893 atgccaccattgtcgtagtatgcaagctccacctcagtgtcaaatcgaagtgtgcaagtg 834

                      
Query: 407 aaggatttccc 417
           ||||| |||||
Sbjct: 833 aaggacttccc 823
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>emb|X97012.1|STRNAAAH S.tuberosum mRNA for aconitase/aconitate hydratase
          Length = 2120

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  cctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtgaag 409
            |||||||||||| | || |||||||||||||| ||||| || || | |||||| ||||||
Sbjct: 1811 cctccatggttgaaataagccaactccacctcagtgtcgaaacgcactatgcaggtgaag 1752

                 
Query: 410  gattt 414
            |||||
Sbjct: 1751 gattt 1747
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>dbj|AB236788.1| Trifolium pratense RNA for putative cytoplasmic aconitate
           hydratase, partial cds, clone: C1842
          Length = 1248

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 acatagggcaggatgcctccatggttgtagtaggccaactccacctctgtgtcaaagcga 394
           |||||||| |||||||||||||||||  ||||  |||| |||||||| || |||||||||
Sbjct: 923 acatagggaaggatgcctccatggttaaagtactccaattccacctcagtatcaaagcga 864

                                    
Query: 395 agtatgcaagtgaaggatttcccgt 419
             | |||| ||||| ||||| ||||
Sbjct: 863 gctgtgcaggtgaaagattttccgt 839
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>gb|AF194945.1|AF194945 Nicotiana tabacum cytosolic aconitase (ACO) mRNA, complete cds
          Length = 3025

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  cctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtgaag 409
            |||||||||||| | || ||||| |||||||| ||||| ||||| | |||||||||||| 
Sbjct: 2695 cctccatggttgaaataagccaattccacctcagtgtcgaagcgcactatgcaagtgaaa 2636

                 
Query: 410  gattt 414
            |||||
Sbjct: 2635 gattt 2631
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>gb|AY104037.1| Zea mays PCO139346 mRNA sequence
          Length = 2256

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tagggcaggatgcctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagt 397
            ||||| |||||||||||||||||| |||| |  | ||| | || |||||| |||||||| 
Sbjct: 1718 tagggaaggatgcctccatggttgaagtatgtgacctcaagctgtgtgtccaagcgaaga 1659

                           
Query: 398  atgcaagtgaaggat 412
             ||||||||||||||
Sbjct: 1658 gtgcaagtgaaggat 1644
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>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0003A09, complete sequence
          Length = 167222

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 377   acctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
             ||||| |||||||| |||||| ||||||||||||| |||||
Sbjct: 46431 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttccc 46471
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 377     acctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
               ||||| |||||||| |||||| ||||||||||||| |||||
Sbjct: 2007670 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttccc 2007710
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>gb|AY250115.1| Lycopersicon pennellii aconitase mRNA, partial cds
          Length = 2694

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 350  cctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtgaag 409
            |||||||||||| | || |||||||||||||| ||||| || || | || ||| ||||||
Sbjct: 2657 cctccatggttgaaataagccaactccacctcagtgtcgaaccgcactacgcaggtgaag 2598

                 
Query: 410  gattt 414
            |||||
Sbjct: 2597 gattt 2593
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 377     acctctgtgtcaaagcgaagtatgcaagtgaaggatttccc 417
               ||||| |||||||| |||||| ||||||||||||| |||||
Sbjct: 2007682 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttccc 2007722
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>gb|AY250116.1| Lycopersicon pennellii aconitase mRNA, partial cds
          Length = 2694

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 350  cctccatggttgtagtaggccaactccacctctgtgtcaaagcgaagtatgcaagtgaag 409
            |||||||||||| | || |||||||||||||| ||||| || || | || ||| ||||||
Sbjct: 2657 cctccatggttgaaataagccaactccacctcagtgtcgaaccgcactacgcaggtgaag 2598

                 
Query: 410  gattt 414
            |||||
Sbjct: 2597 gattt 2593
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>ref|NM_119749.3| Arabidopsis thaliana RNA binding / aconitate hydratase/ hydro-lyase/
            iron ion binding / lyase AT4G35830 mRNA, complete cds
          Length = 3214

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 368  gccaactccacctctgtgtcaaa 390
            |||||||||||||||||||||||
Sbjct: 2747 gccaactccacctctgtgtcaaa 2725
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>emb|X82839.1|ATACON A.thaliana mRNA for aconitase (ZAPII)
          Length = 3209

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 368  gccaactccacctctgtgtcaaa 390
            |||||||||||||||||||||||
Sbjct: 2703 gccaactccacctctgtgtcaaa 2681
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>gb|AY062772.1| Arabidopsis thaliana Unknown protein (At4g35830; F4B14.100) mRNA,
            complete cds
          Length = 2908

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 368  gccaactccacctctgtgtcaaa 390
            |||||||||||||||||||||||
Sbjct: 2674 gccaactccacctctgtgtcaaa 2652
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>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence
          Length = 191373

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    gtttttagcacaaagcaatgt 57
             |||||||||||||||||||||
Sbjct: 32401 gtttttagcacaaagcaatgt 32381
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>emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 in linkage group 4,
             complete sequence
          Length = 152900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aagatttgttcagaatgaaca 113
             |||||||||||||||||||||
Sbjct: 98372 aagatttgttcagaatgaaca 98352
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ccagttcaaatatgttttta 43
              ||||||||||||||||||||
Sbjct: 987023 ccagttcaaatatgttttta 987042
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>gb|AC102087.12| Mus musculus chromosome 13, clone RP23-166D15, complete sequence
          Length = 221034

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    gccaactccacctctgtgtc 387
              ||||||||||||||||||||
Sbjct: 162542 gccaactccacctctgtgtc 162523
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>emb|BX914212.8| Zebrafish DNA sequence from clone CH211-105P7 in linkage group 18,
             complete sequence
          Length = 67940

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tgtttcataaccacaaccaa 135
             ||||||||||||||||||||
Sbjct: 22022 tgtttcataaccacaaccaa 22003
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 229     cttgatgtccacggtggcac 248
               ||||||||||||||||||||
Sbjct: 4321316 cttgatgtccacggtggcac 4321297
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>emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, complete sequence
          Length = 70570

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    actgaagatttgttcagaatgaac 112
             |||||||||||||||| |||||||
Sbjct: 57923 actgaagatttgttcaaaatgaac 57946
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>gb|AC091135.9| Homo sapiens chromosome 18, clone RP11-289E15, complete sequence
          Length = 166207

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 306   atttctgagctcctgccatgttgc 329
             |||||||| |||||||||||||||
Sbjct: 23473 atttctgaactcctgccatgttgc 23496
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>gb|AC146884.3| Callithrix jacchus clone CH259-252N7, complete sequence
          Length = 219392

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ccagttcaaatatgttttta 43
              ||||||||||||||||||||
Sbjct: 111685 ccagttcaaatatgttttta 111704
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>emb|BX936464.7| Zebrafish DNA sequence from clone DKEY-246O4 in linkage group 18,
            complete sequence
          Length = 167114

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  ttcagaatgaacacatgttt 120
            ||||||||||||||||||||
Sbjct: 1652 ttcagaatgaacacatgttt 1671
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     cataaggccacaacataatg 220
               ||||||||||||||||||||
Sbjct: 5020365 cataaggccacaacataatg 5020384
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   cataaggccacaacataatg 220
             ||||||||||||||||||||
Sbjct: 62479 cataaggccacaacataatg 62498
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>emb|BX005271.9| Zebrafish DNA sequence from clone CH211-145F15 in linkage group 5,
             complete sequence
          Length = 162019

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    actgaagatttgttcagaatgaac 112
             |||||||||||||||| |||||||
Sbjct: 22223 actgaagatttgttcaaaatgaac 22246
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>emb|AL954331.8| Zebrafish DNA sequence from clone CH211-79E4 in linkage group 7, complete
              sequence
          Length = 193627

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ttcagaatgaacacatgttt 120
              ||||||||||||||||||||
Sbjct: 173711 ttcagaatgaacacatgttt 173730
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>emb|BX323582.13| Zebrafish DNA sequence from clone CH211-143E19 in linkage group 18,
             complete sequence
          Length = 80226

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tgtttcataaccacaaccaa 135
             ||||||||||||||||||||
Sbjct: 38806 tgtttcataaccacaaccaa 38825
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>gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M10, complete sequence
          Length = 189199

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ccagttcaaatatgttttta 43
             ||||||||||||||||||||
Sbjct: 69105 ccagttcaaatatgttttta 69124
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>gb|AC150597.4| Aotus nancymaae clone CH258-191N23, complete sequence
          Length = 97432

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ccagttcaaatatgttttta 43
             ||||||||||||||||||||
Sbjct: 31726 ccagttcaaatatgttttta 31745


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,719,958
Number of Sequences: 3902068
Number of extensions: 3719958
Number of successful extensions: 62912
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62769
Number of HSP's gapped (non-prelim): 142
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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