ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIMM_RHIME (Q92L42) Probable 16S rRNA-processing protein rimM 28 8.5

>RIMM_RHIME (Q92L42) Probable 16S rRNA-processing protein rimM|
          Length = 187

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -1

Query: 176 GVFTAMSDELMLFQLKKKSLRPLIIPFLTPWRIITIGI 63
           GVF   + +L+  +LK   LRP++IPF T W ++ I +
Sbjct: 122 GVFDFGAGDLL--ELKGPGLRPVLIPF-TEWSVLEIDL 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,689,241
Number of Sequences: 219361
Number of extensions: 437531
Number of successful extensions: 884
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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