ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_948594.1| Theileria annulata strain Ankara elongation fac... 42 0.67
2gb|AC073183.7| Homo sapiens BAC clone CTD-2021D19 from 7, comple... 42 0.67
3emb|CT030572.1| Xenopus tropicalis finished cDNA, clone TNeu071k23 40 2.6
4emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 ... 40 2.6
5emb|AL392087.7| Human DNA sequence from clone RP11-454H24 on chr... 40 2.6
6emb|X94357.1|SCHRVIILT S.cerevisiae left telomeric region from c... 40 2.6
7emb|X67787.1|SCFZF1 S.cerevisiae FZF1, HXK2 genes and ORF1 for z... 40 2.6
8emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 2.6
9emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 2.6
10emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 2.6
11dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome 40 2.6
12dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 2.6
13gb|DQ369984.1| HIV-1 isolate 03ZAPS046MB1 from South Africa, com... 40 2.6
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
15dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
16dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.6
17gb|AC005873.3|AC005873 citb_15_o_21, complete sequence 40 2.6
18emb|AL929340.4| Zebrafish DNA sequence from clone CH211-248N16 i... 40 2.6
19emb|Z72777.1|SCYGL255W S.cerevisiae chromosome VII reading frame... 40 2.6

>ref|XM_948594.1| Theileria annulata strain Ankara elongation factor 2 (TA16255)
            partial mRNA
          Length = 3681

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 71   tagttattattctccagggcgtcaa 95
            |||| ||||||||||||||||||||
Sbjct: 3193 tagtcattattctccagggcgtcaa 3169



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>gb|AC073183.7| Homo sapiens BAC clone CTD-2021D19 from 7, complete sequence
          Length = 33844

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   atcatataccaatagttatta 79
            |||||||||||||||||||||
Sbjct: 4651 atcatataccaatagttatta 4671



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>emb|CT030572.1| Xenopus tropicalis finished cDNA, clone TNeu071k23
          Length = 1750

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  ctttgatataaaatcatata 66
           ||||||||||||||||||||
Sbjct: 762 ctttgatataaaatcatata 781



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>emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 on chromosome 3,
             complete sequence
          Length = 119364

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    ttgatataaaatcatataccaata 72
             |||||| |||||||||||||||||
Sbjct: 13482 ttgataaaaaatcatataccaata 13505



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>emb|AL392087.7| Human DNA sequence from clone RP11-454H24 on chromosome 10 Contains part
              of a novel gene (KIAA0534), complete sequence
          Length = 193980

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     catataccaatagttattat 80
              ||||||||||||||||||||
Sbjct: 182771 catataccaatagttattat 182790



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>emb|X94357.1|SCHRVIILT S.cerevisiae left telomeric region from chromosome VII
          Length = 39411

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tcaaaaaaggaattatgagc 111
             ||||||||||||||||||||
Sbjct: 20964 tcaaaaaaggaattatgagc 20983



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>emb|X67787.1|SCFZF1 S.cerevisiae FZF1, HXK2 genes and ORF1 for zinc finger protein and
           hexokinase PII
          Length = 4430

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  tcaaaaaaggaattatgagc 111
           ||||||||||||||||||||
Sbjct: 716 tcaaaaaaggaattatgagc 735



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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      tataaaatcatataccaata 72
               ||||||||||||||||||||
Sbjct: 1484167 tataaaatcatataccaata 1484186



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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      tataaaatcatataccaata 72
               ||||||||||||||||||||
Sbjct: 1470517 tataaaatcatataccaata 1470536



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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      tataaaatcatataccaata 72
               ||||||||||||||||||||
Sbjct: 1506398 tataaaatcatataccaata 1506417



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>dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome
          Length = 43785

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   agattttttctttagctgaa 139
             ||||||||||||||||||||
Sbjct: 25638 agattttttctttagctgaa 25619



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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     tttttctttagctgaaacaa 143
               ||||||||||||||||||||
Sbjct: 1315615 tttttctttagctgaaacaa 1315596



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>gb|DQ369984.1| HIV-1 isolate 03ZAPS046MB1 from South Africa, complete genome
          Length = 9101

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 118  aaagattttttctttagctgaaacaaca 145
            ||||||| |||||||| |||||||||||
Sbjct: 3390 aaagattatttctttaactgaaacaaca 3417



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 111     cgggcgtaaagattttttctttag 134
               |||| |||||||||||||||||||
Sbjct: 4604884 cgggagtaaagattttttctttag 4604907



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   cgggcgtaaagattttttctttag 134
             |||| |||||||||||||||||||
Sbjct: 57753 cgggagtaaagattttttctttag 57776



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>dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5
          Length = 88398

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   tataaaatcatataccaata 72
            ||||||||||||||||||||
Sbjct: 2916 tataaaatcatataccaata 2935



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>gb|AC005873.3|AC005873 citb_15_o_21, complete sequence
          Length = 195653

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     catataccaatagttattat 80
              ||||||||||||||||||||
Sbjct: 132207 catataccaatagttattat 132188



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>emb|AL929340.4| Zebrafish DNA sequence from clone CH211-248N16 in linkage group 20,
              complete sequence
          Length = 163231

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tgatataaaatcatatacca 69
              ||||||||||||||||||||
Sbjct: 115172 tgatataaaatcatatacca 115153



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>emb|Z72777.1|SCYGL255W S.cerevisiae chromosome VII reading frame ORF YGL255w
          Length = 5996

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   tcaaaaaaggaattatgagc 111
            ||||||||||||||||||||
Sbjct: 4657 tcaaaaaaggaattatgagc 4676


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,904,058
Number of Sequences: 3902068
Number of extensions: 2904058
Number of successful extensions: 193346
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193120
Number of HSP's gapped (non-prelim): 226
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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