ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
2gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
5gb|AY609318.1| Zea mays multidrug-resistance associated protein ... 88 3e-14
6gb|AY105014.1| Zea mays PCO078370 mRNA sequence 88 3e-14
7ref|NM_185600.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
10gb|AC156792.2| Mus musculus BAC clone RP24-160P13 from chromosom... 48 0.024
11gb|DQ115909.1| Ajaia ajaja microsatellite Aaju9 sequence 46 0.093
12gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromos... 44 0.37
13dbj|BS000213.2| Pan troglodytes chromosome 22 clone:PTB-042D04, ... 44 0.37
14gb|AC173211.3| Gallus gallus BAC clone CH261-2F13 from chromosom... 44 0.37
15gb|AC161469.3| Gallus gallus BAC clone CH261-69M17 from chromoso... 44 0.37
16emb|AL935142.8| Zebrafish DNA sequence from clone CH211-227M23, ... 44 0.37
17gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosom... 44 0.37
18emb|BX897747.8| Zebrafish DNA sequence from clone DKEY-187J14 in... 44 0.37
19dbj|AB235803.1| Ciconia boyciana CR1 gene for chicken repeat 1, ... 42 1.5
20dbj|AB235729.1| Gavia pacifica CR1 gene for chicken repeat 1, pa... 42 1.5
21dbj|AB235664.1| Eudyptes chrysocome CR1 gene for chicken repeat ... 42 1.5
22dbj|AB235651.1| Eudyptula minor CR1 gene for chicken repeat 1, p... 42 1.5
23dbj|AB235629.1| Eudyptula minor CR1 gene for chicken repeat 1, p... 42 1.5
24gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromoso... 42 1.5
25gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 5.7
26gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, com... 40 5.7
27ref|XM_323161.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
28ref|XM_952867.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
29gb|AE002124.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 40 5.7
30gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosom... 40 5.7
31gb|AC157545.12| Mus musculus chromosome 1, clone RP23-317L18, co... 40 5.7
32gb|AC102157.12| Mus musculus chromosome 1, clone RP23-393K4, com... 40 5.7
33emb|Z66499.1|CET01B7 Caenorhabditis elegans Cosmid T01B7, comple... 40 5.7
34gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome... 40 5.7
35gb|AC126553.4| Mus musculus BAC clone RP23-448L16 from chromosom... 40 5.7
36gb|AC099690.8| Mus musculus chromosome 8, clone RP23-73E9, compl... 40 5.7
37emb|AL161426.7| Human DNA sequence from clone RP11-23P11 on chro... 40 5.7
38emb|AL023775.1|HS497J21 Human DNA sequence from clone RP3-497J21... 40 5.7
39gb|AC157543.8| Mus musculus chromosome 1, clone RP23-271O17, com... 40 5.7
40gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromoso... 40 5.7
41gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, com... 40 5.7
42emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chro... 40 5.7
43dbj|AB235722.1| Gavia pacifica CR1 gene for chicken repeat 1, pa... 40 5.7
44gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, compl... 40 5.7
45gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, com... 40 5.7
46gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, comp... 40 5.7
47gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 5.7
48gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, com... 40 5.7
49gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome... 40 5.7
50gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana... 40 5.7
51gb|AC007489.3|AC007489 Homo sapiens chromosome 16 clone RP11-122... 40 5.7
52gb|AC157756.1| Mus musculus 10 BAC RP24-377M12 (Roswell Park Can... 40 5.7
53emb|AL929233.9| Mouse DNA sequence from clone RP23-388H13 on chr... 40 5.7
54gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 5.7
55gb|AC147720.1| Gallus gallus BAC clone CH261-46I14 from chromoso... 40 5.7
56gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complet... 40 5.7 
>dbj|AK065863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D07, full
            insert sequence
          Length = 3618

 Score =  109 bits (55), Expect = 7e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                        
Query: 309  ctaaatttttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagaga 368
            |||||| |||||||| |||| ||| ||||||||||| || || || || || ||||||||
Sbjct: 3068 ctaaatatttccattcgatgcgtatgaccagtactccttgacaagatctcggaagagaga 3009

                                                                       
Query: 369  tccttcagtttccatgagcttcgcaggtttgtcatactccgctactttcccatcactca 427
            ||||||||||||||||||||||  |||||||||||||||| | | ||||||||| ||||
Sbjct: 3008 tccttcagtttccatgagcttcataggtttgtcatactccaccattttcccatcgctca 2950
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>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0030I09 map C83B, complete sequence
          Length = 123477

 Score =  103 bits (52), Expect = 5e-19
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                         
Query: 309   ctaaatttttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagaga 368
             |||||| |||||||| |||| ||| ||||||||||| || || || || || ||||||||
Sbjct: 33293 ctaaatatttccattcgatgcgtatgaccagtactccttgacaagatctcggaagagaga 33234

                                                     
Query: 369   tccttcagtttccatgagcttcgcaggtttgtcatactcc 408
             ||||||||||||||||||||||  ||||||||||||||||
Sbjct: 33233 tccttcagtttccatgagcttcataggtttgtcatactcc 33194
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  103 bits (52), Expect = 5e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                           
Query: 309     ctaaatttttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagaga 368
               |||||| |||||||| |||| ||| ||||||||||| || || || || || ||||||||
Sbjct: 2589111 ctaaatatttccattcgatgcgtatgaccagtactccttgacaagatctcggaagagaga 2589170

                                                       
Query: 369     tccttcagtttccatgagcttcgcaggtttgtcatactcc 408
               ||||||||||||||||||||||  ||||||||||||||||
Sbjct: 2589171 tccttcagtttccatgagcttcataggtttgtcatactcc 2589210
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  103 bits (52), Expect = 5e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                           
Query: 309     ctaaatttttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagaga 368
               |||||| |||||||| |||| ||| ||||||||||| || || || || || ||||||||
Sbjct: 2598142 ctaaatatttccattcgatgcgtatgaccagtactccttgacaagatctcggaagagaga 2598201

                                                       
Query: 369     tccttcagtttccatgagcttcgcaggtttgtcatactcc 408
               ||||||||||||||||||||||  ||||||||||||||||
Sbjct: 2598202 tccttcagtttccatgagcttcataggtttgtcatactcc 2598241
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>gb|AY609318.1| Zea mays multidrug-resistance associated protein 3 (MRP3) gene,
            complete cds
          Length = 7315

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                        
Query: 316  tttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagagatccttca 375
            |||| ||| |||||||| ||||||||||| || || || || || |||||||||||||| 
Sbjct: 6942 tttcaattcgatgtgtatgaccagtactccttgacaagatcacggaagagagatccttcg 6883

                                                                
Query: 376  gtttccatgagcttcgcaggtttgtcatactccgctactttcccatcactca 427
            ||||||| |||||| | ||| ||||| |||||| |||||||||| |||||||
Sbjct: 6882 gtttccacgagctttgtaggcttgtcgtactccactactttcccgtcactca 6831
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>gb|AY105014.1| Zea mays PCO078370 mRNA sequence
          Length = 1531

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                        
Query: 316  tttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagagatccttca 375
            |||| ||| |||||||| ||||||||||| || || || || || |||||||||||||| 
Sbjct: 1019 tttcaattcgatgtgtatgaccagtactccttgacaagatcacggaagagagatccttcg 960

                                                                
Query: 376  gtttccatgagcttcgcaggtttgtcatactccgctactttcccatcactca 427
            ||||||| |||||| | ||| ||||| |||||| |||||||||| |||||||
Sbjct: 959  gtttccacgagctttgtaggcttgtcgtactccactactttcccgtcactca 908
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>ref|NM_185600.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4416

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  tttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagagatccttca 375
            |||||| | |||| ||| ||||||||||| || || ||||| || || ||||| ||||| 
Sbjct: 4409 tttccactcgatgcgtatgaccagtactccttgacgagctctcggaaaagagaaccttct 4350

                                             
Query: 376  gtttccatgagcttcgcaggtttgtcatactcc 408
            |||||||||||||||| ||||||||||||||||
Sbjct: 4349 gtttccatgagcttcgtaggtttgtcatactcc 4317
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                           
Query: 316     tttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagagatccttca 375
               |||||| | |||| ||| ||||||||||| || || ||||| || || ||||| ||||| 
Sbjct: 3000493 tttccactcgatgcgtatgaccagtactccttgacgagctctcggaaaagagaaccttct 3000552

                                                
Query: 376     gtttccatgagcttcgcaggtttgtcatactcc 408
               |||||||||||||||| ||||||||||||||||
Sbjct: 3000553 gtttccatgagcttcgtaggtttgtcatactcc 3000585
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>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0702F05
          Length = 145018

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 316   tttccattagatgtgtacgaccagtactcgttaaccagctcgcgaaagagagatccttca 375
             |||||| | |||| ||| ||||||||||| || || ||||| || || ||||| ||||| 
Sbjct: 88442 tttccactcgatgcgtatgaccagtactccttgacgagctctcggaaaagagaaccttct 88501

                                              
Query: 376   gtttccatgagcttcgcaggtttgtcatactcc 408
             |||||||||||||||| ||||||||||||||||
Sbjct: 88502 gtttccatgagcttcgtaggtttgtcatactcc 88534
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>gb|AC156792.2| Mus musculus BAC clone RP24-160P13 from chromosome 12, complete
             sequence
          Length = 187170

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 297   caaaaatctcttctaaatttttccatta 324
             ||||||||| ||||||||||||||||||
Sbjct: 34886 caaaaatctgttctaaatttttccatta 34913
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>gb|DQ115909.1| Ajaia ajaja microsatellite Aaju9 sequence
          Length = 625

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 135 tttcaggtagctgtagagagcaa 157
           |||||||||||||||||||||||
Sbjct: 274 tttcaggtagctgtagagagcaa 296
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>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete
              sequence
          Length = 216348

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 136    ttcaggtagctgtagagagcaa 157
              ||||||||||||||||||||||
Sbjct: 129826 ttcaggtagctgtagagagcaa 129805
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>dbj|BS000213.2| Pan troglodytes chromosome 22 clone:PTB-042D04, map 22, complete
             sequences
          Length = 172879

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 5     gaaagagaaagaaaacagaacc 26
             ||||||||||||||||||||||
Sbjct: 53261 gaaagagaaagaaaacagaacc 53240
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>gb|AC173211.3| Gallus gallus BAC clone CH261-2F13 from chromosome ul, complete
             sequence
          Length = 204791

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 135   tttcaggtagctgtagagagca 156
             ||||||||||||||||||||||
Sbjct: 60947 tttcaggtagctgtagagagca 60968
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>gb|AC161469.3| Gallus gallus BAC clone CH261-69M17 from chromosome ul, complete
             sequence
          Length = 186443

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 135   tttcaggtagctgtagagagca 156
             ||||||||||||||||||||||
Sbjct: 47904 tttcaggtagctgtagagagca 47883
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>emb|AL935142.8| Zebrafish DNA sequence from clone CH211-227M23, complete sequence
          Length = 160780

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 355   tcgcgaaagagagatccttcagtttc 380
             ||||||||||||||||||||| ||||
Sbjct: 40877 tcgcgaaagagagatccttcaatttc 40852
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>gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosome unknown, complete
              sequence
          Length = 192621

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 136    ttcaggtagctgtagagagcaa 157
              ||||||||||||||||||||||
Sbjct: 128978 ttcaggtagctgtagagagcaa 128957
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>emb|BX897747.8| Zebrafish DNA sequence from clone DKEY-187J14 in linkage group 14,
              complete sequence
          Length = 217125

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     gttttttaagagtggcaatact 100
              ||||||||||||||||||||||
Sbjct: 126936 gttttttaagagtggcaatact 126915
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>dbj|AB235803.1| Ciconia boyciana CR1 gene for chicken repeat 1, partial sequence,
           clone: stork2-55
          Length = 333

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 tttcaggtagctgtagagagc 155
           |||||||||||||||||||||
Sbjct: 280 tttcaggtagctgtagagagc 300
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>dbj|AB235729.1| Gavia pacifica CR1 gene for chicken repeat 1, partial sequence,
           clone: loon2-2B
          Length = 337

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tttcaggtagctgtagagagc 155
           |||||||||||||||||||||
Sbjct: 54  tttcaggtagctgtagagagc 34
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>dbj|AB235664.1| Eudyptes chrysocome CR1 gene for chicken repeat 1, partial
           sequence, clone: RP2-10
          Length = 331

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tttcaggtagctgtagagagc 155
           |||||||||||||||||||||
Sbjct: 54  tttcaggtagctgtagagagc 34
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>dbj|AB235651.1| Eudyptula minor CR1 gene for chicken repeat 1, partial sequence,
           clone: fairy2-9
          Length = 330

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tttcaggtagctgtagagagc 155
           |||||||||||||||||||||
Sbjct: 54  tttcaggtagctgtagagagc 34
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>dbj|AB235629.1| Eudyptula minor CR1 gene for chicken repeat 1, partial sequence,
           clone: fairy2-1
          Length = 330

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 135 tttcaggtagctgtagagagc 155
           |||||||||||||||||||||
Sbjct: 54  tttcaggtagctgtagagagc 34
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>gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromosome ul, complete sequence
          Length = 176981

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    tttcaggtagctgtagagagc 155
              |||||||||||||||||||||
Sbjct: 168761 tttcaggtagctgtagagagc 168741
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 274    ggcagcagcaccaagcacaccatc 297
              |||||||||||| |||||||||||
Sbjct: 212101 ggcagcagcaccgagcacaccatc 212124
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>gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, complete sequence
          Length = 145246

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ttctaaatttttccattaga 326
             ||||||||||||||||||||
Sbjct: 77047 ttctaaatttttccattaga 77028
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>ref|XM_323161.1| Neurospora crassa OR74A hypothetical protein (NCU10043.1) partial
            mRNA
          Length = 3879

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  cagcaccaagcacaccatcaaaaa 302
            |||||||||| |||||||||||||
Sbjct: 2787 cagcaccaagtacaccatcaaaaa 2810
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>ref|XM_952867.1| Neurospora crassa OR74A hypothetical protein (NCU10043.1) partial
            mRNA
          Length = 3879

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  cagcaccaagcacaccatcaaaaa 302
            |||||||||| |||||||||||||
Sbjct: 2787 cagcaccaagtacaccatcaaaaa 2810
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>gb|AE002124.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 25 of 59 of the
            complete genome
          Length = 10948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 295  atcaaaaatctcttctaaattttt 318
            ||||||||| ||||||||||||||
Sbjct: 1049 atcaaaaatttcttctaaattttt 1026
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>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete
             sequence
          Length = 205141

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aaaatcatttcctgagaaac 175
             ||||||||||||||||||||
Sbjct: 27370 aaaatcatttcctgagaaac 27351
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>gb|AC157545.12| Mus musculus chromosome 1, clone RP23-317L18, complete sequence
          Length = 197367

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 31317 gaaagagaaagaaaacagaa 31336
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>gb|AC102157.12| Mus musculus chromosome 1, clone RP23-393K4, complete sequence
          Length = 220638

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 41777 gaaagagaaagaaaacagaa 41758
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>emb|Z66499.1|CET01B7 Caenorhabditis elegans Cosmid T01B7, complete sequence
          Length = 26180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 18845 gaaagagaaagaaaacagaa 18864
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>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 90297 gaaagagaaagaaaacagaa 90316
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>gb|AC126553.4| Mus musculus BAC clone RP23-448L16 from chromosome 18, complete sequence
          Length = 184463

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    aaaatctcttctaaattttt 318
              ||||||||||||||||||||
Sbjct: 153764 aaaatctcttctaaattttt 153745
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>gb|AC099690.8| Mus musculus chromosome 8, clone RP23-73E9, complete sequence
          Length = 225655

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ttctaaatttttccattaga 326
             ||||||||||||||||||||
Sbjct: 10389 ttctaaatttttccattaga 10370
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>emb|AL161426.7| Human DNA sequence from clone RP11-23P11 on chromosome 13 Contains part
              of the GPC6 gene for glypican 6 and the 3' end of a novel
              gene, complete sequence
          Length = 150021

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    cttcagtttccatgagcttc 390
              ||||||||||||||||||||
Sbjct: 149282 cttcagtttccatgagcttc 149263
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>emb|AL023775.1|HS497J21 Human DNA sequence from clone RP3-497J21 on chromosome 6q26-27 Contains
             part of a variant of the RPS6KA2 gene for ribosomal
             protein S6 kinase, 90kD, polypeptide 2 (RSK3) and a IGF-II
             mRNA-binding protein 3 (KOC1) pseudogene, complete
             sequence
          Length = 129432

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   cttcagtttccatgagcttc 390
             ||||||||||||||||||||
Sbjct: 59259 cttcagtttccatgagcttc 59240
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>gb|AC157543.8| Mus musculus chromosome 1, clone RP23-271O17, complete sequence
          Length = 223464

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 14870 gaaagagaaagaaaacagaa 14851
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>gb|AC175318.4| Gallus gallus BAC clone CH261-46G16 from chromosome w, complete
             sequence
          Length = 205599

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tttcaggtagctgtagagag 154
             ||||||||||||||||||||
Sbjct: 68050 tttcaggtagctgtagagag 68069
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>gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, complete sequence
          Length = 163623

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    ttctaaatttttccattaga 326
              ||||||||||||||||||||
Sbjct: 158045 ttctaaatttttccattaga 158026
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>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the
             3' end of the Dbccr1 gene for deleted in bladder cancer
             chromosome region candidate 1 (human), complete sequence
          Length = 203865

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 81557 gaaagagaaagaaaacagaa 81538
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>dbj|AB235722.1| Gavia pacifica CR1 gene for chicken repeat 1, partial sequence,
           clone: loon2-25
          Length = 333

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 tcaggtagctgtagagagca 156
           ||||||||||||||||||||
Sbjct: 52  tcaggtagctgtagagagca 33
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>gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, complete sequence
          Length = 142464

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 47063 gaaagagaaagaaaacagaa 47082
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>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    ttctaaatttttccattaga 326
              ||||||||||||||||||||
Sbjct: 165342 ttctaaatttttccattaga 165361
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>gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, complete sequence
          Length = 155180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    gaaagagaaagaaaacagaa 24
            ||||||||||||||||||||
Sbjct: 9109 gaaagagaaagaaaacagaa 9128
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     aggcagcagcaccaagcaca 292
               ||||||||||||||||||||
Sbjct: 2000481 aggcagcagcaccaagcaca 2000500
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>gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, complete sequence
          Length = 163228

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gaaagagaaagaaaacagaa 24
              ||||||||||||||||||||
Sbjct: 118485 gaaagagaaagaaaacagaa 118466
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>gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome 16, complete sequence
          Length = 178958

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 98316 gaaagagaaagaaaacagaa 98335
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>gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I,
             complete sequence
          Length = 90149

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aaagagaaagaaaacagaac 25
             ||||||||||||||||||||
Sbjct: 28153 aaagagaaagaaaacagaac 28172
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>gb|AC007489.3|AC007489 Homo sapiens chromosome 16 clone RP11-122K22, complete sequence
          Length = 180401

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      gaaagagaaagaaaacagaa 24
              ||||||||||||||||||||
Sbjct: 154417 gaaagagaaagaaaacagaa 154436
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>gb|AC157756.1| Mus musculus 10 BAC RP24-377M12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180821

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aagagaaagaaaacagaacc 26
              ||||||||||||||||||||
Sbjct: 107163 aagagaaagaaaacagaacc 107144
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>emb|AL929233.9| Mouse DNA sequence from clone RP23-388H13 on chromosome 2, complete
             sequence
          Length = 133534

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gaaagagaaagaaaacagaa 24
             ||||||||||||||||||||
Sbjct: 66765 gaaagagaaagaaaacagaa 66784
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    aggcagcagcaccaagcaca 292
              ||||||||||||||||||||
Sbjct: 957581 aggcagcagcaccaagcaca 957562
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>gb|AC147720.1| Gallus gallus BAC clone CH261-46I14 from chromosome unknown, complete
              sequence
          Length = 204711

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    tttcaggtagctgtagagag 154
              ||||||||||||||||||||
Sbjct: 138776 tttcaggtagctgtagagag 138757
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>gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complete sequence
          Length = 207528

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ttctaaatttttccattaga 326
             ||||||||||||||||||||
Sbjct: 26688 ttctaaatttttccattaga 26707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,649,547
Number of Sequences: 3902068
Number of extensions: 4649547
Number of successful extensions: 120509
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120290
Number of HSP's gapped (non-prelim): 219
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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