>CSTA_HELPY (P56190) Carbon starvation protein A homolog|
          Length = 687

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = -2

Query: 465 PFHPGTGPCRYSHTILVF*VALVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVD 286
           PF  G+GP  ++ ++  F    V+    S  H        SSG +P +L  E        
Sbjct: 312 PFVDGSGPV-FAGSVFPFLFITVACGTISGFHA-----LISSGTTPKMLAKESDAR---- 361

Query: 285 IDIVIEFGSVSMLRSCVLFSLVCVWC-HVGLLFSCGSS*ECLVFGDLAVARRILEPGGYN 109
              ++ +GS+ M     L +LVC    H GL F+  S  E  +  D+A A  ++   G+N
Sbjct: 362 ---LVGYGSMVMESVVALMALVCAGILHPGLYFAINSP-EVSIGKDIADAASVISSWGFN 417

Query: 108 L 106
           +
Sbjct: 418 I 418

>US17_HCMVA (P09716) Hypothetical protein HVLF1|
          Length = 293

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = -2

Query: 402 LVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVDI-------DIVIEFGSVSMLR 244
           +V ++  +LLHG    G+ +S  SPGLL +  +L  L  I         ++ F   S L 
Sbjct: 86  MVPTICLALLHGKRDEGSFTSPPSPGLLTIYSVLTTLSVIVASACSSSTLVTF---SGLL 142

Query: 243 SCVLFSLVCVWCHVGL 196
           +CVLFSL    C  GL
Sbjct: 143 ACVLFSLCS--CVTGL 156

>CSTA_HELPJ (Q9ZK47) Carbon starvation protein A homolog|
          Length = 687

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = -2

Query: 465 PFHPGTGPCRYSHTILVF*VALVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVD 286
           PF  G+GP  ++ ++  F    V+    S  H        SSG +P +L  E        
Sbjct: 312 PFVDGSGPV-FAGSVFPFLFITVACGTISGFHA-----LISSGTTPKMLAKESDAR---- 361

Query: 285 IDIVIEFGSVSMLRSCVLFSLVCVW-CHVGLLFSCGSS*ECLVFGDLAVARRILEPGGYN 109
              ++ +GS+ M     L +LVC    H GL F+  S  E  +  D+A A  ++   G++
Sbjct: 362 ---LVGYGSMVMESVVALMALVCAGILHPGLYFAINSP-EVSIGKDIADAASVISSWGFS 417

Query: 108 L 106
           +
Sbjct: 418 I 418

>VGNB_APMV (Q02941) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Picornain 3C-like protease (EC 3.4.22.-) (3C-like
           protease) (24 kDa protein); RNA-directed RNA polymerase
           (EC 2.7.7.48) (87 kDa protein)] (Fragment)
          Length = 729

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 315 GSANLETSRWSWRLQLLSHEAV-KK*HWTLEQPKKPVWCGYNG 440
           G   L T+ W     LL    V KK HW + + KK ++C   G
Sbjct: 639 GRGGLPTAHWLRTCMLLEKGNVRKKLHWAMAEKKKIIFCAKGG 681

>YO83_CAEEL (P34619) Hypothetical protein ZK1236.3|
          Length = 1000

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  EKSGTCQEKTTIKGCSRQALVCASRRPDP 155
           EKSG      TIK  +   L+C SR+ DP
Sbjct: 805 EKSGRLNVSNTIKAINEYRLLCNSRQADP 833

>PCNT_MOUSE (P48725) Pericentrin|
          Length = 1920

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 74  IRDLSRKNNHKRL*PPGSSMRLATARSPKTKHS*EEPQEKSNPXXXXXXXRENNTQDLNI 253
           +RD   K+NH++L   G    LA     +TKH  E  ++ ++         E +  +L +
Sbjct: 641 LRDAQEKHNHEQLLQQGHQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQV 700

>NINJ1_HUMAN (Q92982) Ninjurin-1 (Nerve injury-induced protein 1)|
          Length = 152

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 297 MPTGVPGSANLETSRWSWR 353
           +P G PGS +   +RW WR
Sbjct: 14  LPPGTPGSPDASPARWGWR 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,112,272
Number of Sequences: 219361
Number of extensions: 1227204
Number of successful extensions: 2926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2926
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)