ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT_PARLI (P80367) Metallothionein (MT) 32 0.71
2PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1 29 4.6
3SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (... 29 4.6
4MTS1_STRSA (P29347) Modification methylase StsI (EC 2.1.1.72) (A... 29 4.6
5SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG... 29 6.0
6KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup 29 6.0
7SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG... 29 6.0
8PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3 28 7.9
9NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 28 7.9

>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 441 PPASQTCMAFGQVLQIGASGCLFTCSAAAC-CT 346
           P A Q C   G+  + GAS C  TCS AAC CT
Sbjct: 15  PCAGQECCITGKCCKDGASVCCGTCSNAACKCT 47



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>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1|
          Length = 1468

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 297  NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 205
            N F  F  S    P+WW W C  C   +T++
Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403



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>SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (Fragment)|
          Length = 146

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 329 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWE 433
           L+Y+   +Q   L V KH D  +W   P  A+ VWE
Sbjct: 94  LVYDPVTKQLRNLAVQKHNDGALWSAHPILALDVWE 129



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>MTS1_STRSA (P29347) Modification methylase StsI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase StsI) (M.StsI)
          Length = 653

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 43  KYMFL*TRCQAFPKNINSVLQV*HGGEKQSIHLQNSANVPFGTRDDELNRLFGY 204
           KY  L      FPKNIN+ + +  GG    I+++    + F   +  +N +F Y
Sbjct: 373 KYKLLNQILPLFPKNINTFVDIFSGGANVGINVKAKKYI-FNDMNTRINEMFRY 425



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>SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 403

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 132 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 278
           +S A FC   FW +G R++    + R  + W + C   P+   N+ +TS
Sbjct: 357 SSSASFCLSDFWVQGQRLDIDQALSRSQDIWTHSCPQRPS---NDTRTS 402



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>KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup|
          Length = 620

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
 Frame = -2

Query: 437 LLPKHA-WHSAKFSRLAHPGAYLHAVLLPAVRTLRKLGLSSEEENKLIIHFTISASL*IV 261
           LL  HA WH+ +  R  +P   +H VLL    TL  LGL         +  +++    + 
Sbjct: 181 LLGAHAIWHAPQVLRALNPAYAVHFVLLYGQHTLFILGL---------VVLSVTGVEALY 231

Query: 260 APYGGHGI--------AHVVPVILLSLYPKSRFNSSSLVPKGT 156
           A  G  GI        A V+P +LL+ + +  +  +   P G+
Sbjct: 232 ADMGHFGIKPIRIAWFALVMPSLLLNYFGQGAYLLTLSAPTGS 274



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>SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 399

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 132 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMP 248
           NS A FC    W +G R++    + R  N W + C   P
Sbjct: 353 NSSASFCLSDLWVQGQRLDIDQALNRSQNIWTHSCPHSP 391



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>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3|
          Length = 1457

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 258  PIWWAWNCTCCSSDFTVF 205
            PIWW W C  C   +T++
Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392



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>NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)|
          Length = 916

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 314 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTW 409
           PP+  L++ G++  AA  +V  H   P   W TW
Sbjct: 125 PPLAELMHHGFITPAALHYVANHGAVPRGDWSTW 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,781,321
Number of Sequences: 219361
Number of extensions: 1445176
Number of successful extensions: 3574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3574
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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