ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38a09 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 65.5 bits (158), Expect = 3e-11 Identities = 32/32 (100%), Positives = 32/32 (100%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV Sbjct: 925 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 64.3 bits (155), Expect = 7e-11 Identities = 31/32 (96%), Positives = 32/32 (100%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIETIQQ+YTV Sbjct: 925 RLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 64.3 bits (155), Expect = 7e-11 Identities = 31/32 (96%), Positives = 32/32 (100%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIETIQQ+YTV Sbjct: 926 RLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 63.5 bits (153), Expect = 1e-10 Identities = 31/32 (96%), Positives = 31/32 (96%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIETIQQ YTV Sbjct: 921 RLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 63.2 bits (152), Expect = 1e-10 Identities = 30/32 (93%), Positives = 32/32 (100%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVV+LKGLDIETIQQ+YTV Sbjct: 925 RLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 63.2 bits (152), Expect = 1e-10 Identities = 31/32 (96%), Positives = 31/32 (96%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 R RELHTLKGHVESVVKLKGLDIETIQQSYTV Sbjct: 673 RQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 63.2 bits (152), Expect = 1e-10 Identities = 30/32 (93%), Positives = 32/32 (100%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVV+LKGLDIETIQQ+YTV Sbjct: 929 RLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 62.4 bits (150), Expect = 2e-10 Identities = 30/32 (93%), Positives = 31/32 (96%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDI+TIQQ YTV Sbjct: 917 RLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 58.9 bits (141), Expect = 3e-09 Identities = 28/32 (87%), Positives = 31/32 (96%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRE++TLKGHVESVVKLKGLDI+TIQQ YTV Sbjct: 917 RLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 58.5 bits (140), Expect = 4e-09 Identities = 28/32 (87%), Positives = 31/32 (96%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 920 RLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRE+HTLKGHVESVVKLKGLDI+ + Q YTV Sbjct: 918 RLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/32 (84%), Positives = 28/32 (87%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRE HTLKGHVESVVK KGLDIE IQQ YT+ Sbjct: 923 RLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/32 (81%), Positives = 27/32 (84%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESV KLKGLDI+T YTV Sbjct: 917 RLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 53.1 bits (126), Expect = 2e-07 Identities = 28/32 (87%), Positives = 28/32 (87%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIET YTV Sbjct: 917 RLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/32 (87%), Positives = 28/32 (87%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RLRELHTLKGHVESVVKLKGLDIET YTV Sbjct: 918 RLRELHTLKGHVESVVKLKGLDIETAGH-YTV 948
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/24 (70%), Positives = 19/24 (79%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIE 341 R+REL TLKG VES KLKG D+E Sbjct: 929 RMRELQTLKGKVESAAKLKGYDLE 952
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 34.7 bits (78), Expect = 0.055 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = -1 Query: 412 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 317 RL E+H++ H+ESV+KLK +D I+ ++TV Sbjct: 916 RLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>NU1M_ASCSU (P24875) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 290 Score = 30.8 bits (68), Expect = 0.80 Identities = 10/29 (34%), Positives = 21/29 (72%) Frame = -1 Query: 112 FCLFFMFSASMYIMFPPFIFSLLPHVDKS 26 FC F F+ S++I++ PF+F +L ++++ Sbjct: 162 FCFFSFFNLSLFIVYLPFLFMVLAELNRA 190
>MTL5_MOUSE (Q9WTJ6) Tesmin (Metallothionein-like 5, testis-specific)| (Testis-specific metallothionein-like protein) Length = 295 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = +2 Query: 125 RDNLGGAKLHHQRATF*LQ*SCLEHYADDYSSRVHRSTLHSC-------R*PTIKLGIS- 280 + LG AKL H + + CL++Y + Y +++ S++ C P K+ +S Sbjct: 143 KGRLGAAKLRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIACKNYEESPERKMLMST 202 Query: 281 PFFFLPGQRRSS 316 P + PG SS Sbjct: 203 PHYMEPGDFESS 214
>CRSP3_HUMAN (Q9ULK4) CRSP complex subunit 3 (Cofactor required for Sp1| transcriptional activation subunit 3) (Transcriptional coactivator CRSP130) (Vitamin D3 receptor-interacting protein complex 130 kDa component) (DRIP130) (Activator-recruited cofactor Length = 1368 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 149 VWHHLSYRATHLLLFVFYVFSQYVHYVSPLHF*LA 45 +W HLS + L+ FV + F+ + H V LH LA Sbjct: 330 LWQHLS---SQLIFFVLFQFASFPHMVLSLHQKLA 361
>ERFB_ASPFU (Q4WWN2) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein erf2) (Ras protein acyltransferase) Length = 607 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -3 Query: 149 VWHHLSYRATHLLLFVFYV-FSQYVH 75 +WHH+S L ++FY+ FS ++H Sbjct: 327 LWHHISPAVPILFAYLFYICFSSFIH 352
>LCR9_ARATH (P82724) Putative low-molecular-weight cysteine-rich protein LCR9| precursor Length = 78 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 90 QPVCTLCFPPSFLACYH 40 +PV +LC PP CYH Sbjct: 59 KPVASLCLPPKTCRCYH 75
>SPAT7_RAT (Q9R0A3) Spermatogenesis-associated protein 7 homolog (Rat sperm| DNA no.3) (RSD-3) (Fertility-related protein WMP1) Length = 526 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 230 CELDYCNRPRSARDMTTVVKTLPAGDAVWHH 138 C Y RPRSA V+ P+GD + H Sbjct: 135 CGHGYDRRPRSAHQFQVVISKTPSGDLLEKH 165
>MURC_BACSK (Q5WEA8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 435 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -1 Query: 403 ELHTLKGHVESVVKLKGL-DIETIQQSY 323 E+ TLKGH ESV+ G DI+ Q++Y Sbjct: 400 EIETLKGHGESVLLFMGAGDIQKYQKAY 427
>UPAR_BOVIN (Q05588) Urokinase plasminogen activator surface receptor precursor| (uPAR) (U-PAR) (CD87 antigen) Length = 330 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 248 TSEEWICELDYCNRPRSARDMT 183 T E +C D CN+P RD T Sbjct: 85 TLSETVCRSDLCNKPNPGRDAT 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,970,179 Number of Sequences: 219361 Number of extensions: 1046119 Number of successful extensions: 2443 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2443 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
