ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473136.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
2dbj|AK103972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
3dbj|AK072655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
4gb|CP000316.1| Polaromonas sp. JS666, complete genome 46 0.10
5ref|NM_111639.1| Arabidopsis thaliana metal ion binding AT3G0760... 44 0.41
6gb|AY567499.1| HIV-1 isolate SUR05Env from India envelope glycop... 44 0.41
7gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 ... 44 0.41
8gb|AF443111.1| HIV-1 isolate 00BW3876.9 from Botswana, complete ... 44 0.41
9gb|AY137041.1| HIV-1 isolate ZA044e01 from South Africa envelope... 44 0.41
10emb|AJ404193.1|HIM404193 Human immunodeficiency virus type 1 pro... 44 0.41
11gb|AF106351.1|AF106351 HIV-1 isolate TZB0091 from Tanzania, enve... 44 0.41
12gb|U64907.1|ATU64907 Arabidopsis thaliana farnesylated protein A... 44 0.41
13emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chr... 44 0.41
14emb|AL080278.7|HSDJ691N7 Human DNA sequence from clone RP4-691N7... 42 1.6
15emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22... 42 1.6
16emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
17gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosom... 42 1.6
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chr... 42 1.6
20emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 ma... 42 1.6
21dbj|AB050908.1| Human immunodeficiency virus type 1 proviral env... 42 1.6
22dbj|AB050907.1| Human immunodeficiency virus type 1 proviral env... 42 1.6
23gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, c... 40 6.4
24gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, com... 40 6.4
25gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, co... 40 6.4
26gb|AY522332.4| Agrotis segetum granulovirus, complete genome 40 6.4
27gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, com... 40 6.4
28gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome... 40 6.4
29gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, comp... 40 6.4
30emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, compl... 40 6.4
31gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, co... 40 6.4
32gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 6.4
33gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, comp... 40 6.4
34gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, co... 40 6.4
35gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete seq... 40 6.4
36gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 40 6.4
37gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosom... 40 6.4
38emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chro... 40 6.4
39emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C... 40 6.4
40emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 6.4
41emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 6.4
42emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, ... 40 6.4
43gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom... 40 6.4
44gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete seq... 40 6.4
45dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complet... 40 6.4
47gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complet... 40 6.4
48gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 6.4
49dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, compl... 40 6.4
51emb|AL391397.4|CNS06C87 Human chromosome 14 DNA sequence BAC R-6... 40 6.4
52gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 40 6.4
53gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, co... 40 6.4
54emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chr... 40 6.4
55gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complet... 40 6.4
56emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in l... 40 6.4
57emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 40 6.4
58emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 6.4
59emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chro... 40 6.4
60emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chr... 40 6.4 
>ref|XM_473136.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2499

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  agtccctctctttagcacttctcctgtcctttctcttttgttctcgggtacttttcttct 451
            ||||||| ||||||||  | ||| | |||||||||||||| ||||| |||||||||||||
Sbjct: 2497 agtccctttctttagctatcctcttctcctttctcttttgctctcgtgtacttttcttct 2438

                                     
Query: 452  cttcgggtttctttcgcctccaatt 476
            |||   | |||||||||||||||||
Sbjct: 2437 ctttttgcttctttcgcctccaatt 2413
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>dbj|AK103972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C11, full
           insert sequence
          Length = 1057

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 agtccctctctttagcacttctcctgtcctttctcttttgttctcgggtacttttcttct 451
           ||||||| ||||||||  | ||| | |||||||||||||| ||||| |||||||||||||
Sbjct: 943 agtccctttctttagctatcctcttctcctttctcttttgctctcgtgtacttttcttct 884

                                    
Query: 452 cttcgggtttctttcgcctccaatt 476
           |||   | |||||||||||||||||
Sbjct: 883 ctttttgcttctttcgcctccaatt 859
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>dbj|AK072655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134D07, full
            insert sequence
          Length = 2707

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  agtccctctctttagcacttctcctgtcctttctcttttgttctcgggtacttttcttct 451
            ||||||| ||||||||  | ||| | |||||||||||||| ||||| |||||||||||||
Sbjct: 2549 agtccctttctttagctatcctcttctcctttctcttttgctctcgtgtacttttcttct 2490

                                     
Query: 452  cttcgggtttctttcgcctccaatt 476
            |||   | |||||||||||||||||
Sbjct: 2489 ctttttgcttctttcgcctccaatt 2465
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 158     atcttcaacggcaaaacgcggaa 180
               |||||||||||||||||||||||
Sbjct: 4679031 atcttcaacggcaaaacgcggaa 4679053
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>ref|NM_111639.1| Arabidopsis thaliana metal ion binding AT3G07600 mRNA, complete cds
          Length = 725

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 444 tttcttctcttcgggtttcttt 465
           ||||||||||||||||||||||
Sbjct: 350 tttcttctcttcgggtttcttt 329



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 444 tttcttctcttcgggtttctt 464
           |||||||||||||||||||||
Sbjct: 365 tttcttctcttcgggtttctt 345
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>gb|AY567499.1| HIV-1 isolate SUR05Env from India envelope glycoprotein (env) gene,
           partial cds
          Length = 594

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 336 gacaaataatatcaaaacaata 357
           ||||||||||||||||||||||
Sbjct: 33  gacaaataatatcaaaacaata 54
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>gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete
             sequence
          Length = 79296

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 444   tttcttctcttcgggtttcttt 465
             ||||||||||||||||||||||
Sbjct: 10488 tttcttctcttcgggtttcttt 10509



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   tttcttctcttcgggtttctt 464
             |||||||||||||||||||||
Sbjct: 10473 tttcttctcttcgggtttctt 10493
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>gb|AF443111.1| HIV-1 isolate 00BW3876.9 from Botswana, complete genome
          Length = 9030

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 336  gacaaataatatcaaaacaata 357
            ||||||||||||||||||||||
Sbjct: 6400 gacaaataatatcaaaacaata 6421
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>gb|AY137041.1| HIV-1 isolate ZA044e01 from South Africa envelope glycoprotein
           (env) gene, partial cds
          Length = 576

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 336 gacaaataatatcaaaacaata 357
           ||||||||||||||||||||||
Sbjct: 30  gacaaataatatcaaaacaata 51
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>emb|AJ404193.1|HIM404193 Human immunodeficiency virus type 1 proviral partial env gene for
           envelope glycoprotein gp120, strain C_97DC.MBTB11
          Length = 576

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 336 gacaaataatatcaaaacaata 357
           ||||||||||||||||||||||
Sbjct: 15  gacaaataatatcaaaacaata 36
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>gb|AF106351.1|AF106351 HIV-1 isolate TZB0091 from Tanzania, envelope glycoprotein, C2-C5
           region (env) gene, partial cds
          Length = 663

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 336 gacaaataatatcaaaacaata 357
           ||||||||||||||||||||||
Sbjct: 18  gacaaataatatcaaaacaata 39
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>gb|U64907.1|ATU64907 Arabidopsis thaliana farnesylated protein ATFP4 mRNA, partial cds
          Length = 721

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 444 tttcttctcttcgggtttcttt 465
           ||||||||||||||||||||||
Sbjct: 350 tttcttctcttcgggtttcttt 329



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 444 tttcttctcttcgggtttctt 464
           |||||||||||||||||||||
Sbjct: 365 tttcttctcttcgggtttctt 345
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>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete
             sequence
          Length = 102448

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 88    tgataacatacacatgttacag 109
             ||||||||||||||||||||||
Sbjct: 71022 tgataacatacacatgttacag 71043
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>emb|AL080278.7|HSDJ691N7 Human DNA sequence from clone RP4-691N7 on chromosome 1p31.2-32.3
             Contains ESTs, CA repeat (D1S2665), STSs and GSSs,
             complete sequence
          Length = 104513

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 407   cacttctcctgtcctttctct 427
             |||||||||||||||||||||
Sbjct: 66038 cacttctcctgtcctttctct 66058
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>emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22 on chromosome Xq27.1-27.3,
              complete sequence
          Length = 145638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 367    tctttcagtatttcatttatt 387
              |||||||||||||||||||||
Sbjct: 126645 tctttcagtatttcatttatt 126665
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>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
             complete sequence
          Length = 103039

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 440   tacttttcttctcttcgggtttctttcgcctccaatt 476
             |||||||||||||||   | |||||||||||||||||
Sbjct: 86735 tacttttcttctctttttgcttctttcgcctccaatt 86771
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>gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosome 8, complete sequence
          Length = 191336

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 410   ttctcctgtcctttctctttt 430
             |||||||||||||||||||||
Sbjct: 94301 ttctcctgtcctttctctttt 94281
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 440      tacttttcttctcttcgggtttctttcgcctccaatt 476
                |||||||||||||||   | |||||||||||||||||
Sbjct: 25509242 tacttttcttctctttttgcttctttcgcctccaatt 25509278
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>emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chromosome 2, complete
              sequence
          Length = 170074

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 337    acaaataatatcaaaacaata 357
              |||||||||||||||||||||
Sbjct: 146989 acaaataatatcaaaacaata 147009
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>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete
             sequence
          Length = 188890

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   tctttcagtatttcatttatt 387
             |||||||||||||||||||||
Sbjct: 81068 tctttcagtatttcatttatt 81088
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>dbj|AB050908.1| Human immunodeficiency virus type 1 proviral env gene, C2-V3
           loop-C3 region, partial cds, isolate:patiant:99ZM18
          Length = 279

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 acaaataatatcaaaacaata 357
           |||||||||||||||||||||
Sbjct: 34  acaaataatatcaaaacaata 54
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>dbj|AB050907.1| Human immunodeficiency virus type 1 proviral env gene, C2-V3
           loop-C3 region, partial cds, isolate:patiant:99ZM13
          Length = 279

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 acaaataatatcaaaacaata 357
           |||||||||||||||||||||
Sbjct: 34  acaaataatatcaaaacaata 54
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>gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, complete sequence
          Length = 149834

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 378   ttcatttattattcagtccctctc 401
             |||||||||||||||||| |||||
Sbjct: 42028 ttcatttattattcagtctctctc 42005
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>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence
          Length = 196086

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    aaccctgagacaaataatat 347
              ||||||||||||||||||||
Sbjct: 193926 aaccctgagacaaataatat 193907
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>gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, complete sequence
          Length = 189965

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ctgggtgaactcactcagga 52
             ||||||||||||||||||||
Sbjct: 17435 ctgggtgaactcactcagga 17416
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>gb|AY522332.4| Agrotis segetum granulovirus, complete genome
          Length = 131680

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    tcatctttcatgtcaaaatc 242
              ||||||||||||||||||||
Sbjct: 117465 tcatctttcatgtcaaaatc 117446
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>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ctgggtgaactcactcagga 52
             ||||||||||||||||||||
Sbjct: 57571 ctgggtgaactcactcagga 57552
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>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence
          Length = 174973

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    tctgggtgaactcactcaggacaa 55
             ||||||| ||||||||||||||||
Sbjct: 42400 tctgggttaactcactcaggacaa 42377
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>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence
          Length = 215326

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cccaagataaactgtgataa 93
             ||||||||||||||||||||
Sbjct: 82295 cccaagataaactgtgataa 82276
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>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence
          Length = 246237

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aacaaaaatatttcaccaca 73
              ||||||||||||||||||||
Sbjct: 104631 aacaaaaatatttcaccaca 104612
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>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   aaccctgagacaaataatat 347
             ||||||||||||||||||||
Sbjct: 65133 aaccctgagacaaataatat 65152
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    ttcagtatttcatttattat 389
              ||||||||||||||||||||
Sbjct: 121309 ttcagtatttcatttattat 121328
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>gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, complete sequence
          Length = 174783

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    aaccctgagacaaataatat 347
              ||||||||||||||||||||
Sbjct: 109212 aaccctgagacaaataatat 109231
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>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence
          Length = 250880

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    tcttcaatcatctttcatgt 235
              ||||||||||||||||||||
Sbjct: 164357 tcttcaatcatctttcatgt 164376
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>gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete sequence
          Length = 91507

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 424   ctcttttgttctcgggtacttttc 447
             ||||||| ||||||||||||||||
Sbjct: 23494 ctctttttttctcgggtacttttc 23471
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>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   agtatttcatttattattca 392
             ||||||||||||||||||||
Sbjct: 14379 agtatttcatttattattca 14360
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>gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosome 9, complete sequence
          Length = 204861

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    tgcctcctctttcagtattt 379
              ||||||||||||||||||||
Sbjct: 140586 tgcctcctctttcagtattt 140605
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>emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chromosome 10 Contains part
             of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin
             G), complete sequence
          Length = 172177

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   agtatttcatttattattca 392
             ||||||||||||||||||||
Sbjct: 66400 agtatttcatttattattca 66381
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>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 122049

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    agacatacatataacatctg 35
             ||||||||||||||||||||
Sbjct: 55279 agacatacatataacatctg 55298
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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No.
            2
          Length = 198354

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  atctttcatgtcaaaatcat 244
            ||||||||||||||||||||
Sbjct: 2036 atctttcatgtcaaaatcat 2055
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>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    atctttcatgtcaaaatcat 244
              ||||||||||||||||||||
Sbjct: 200292 atctttcatgtcaaaatcat 200311
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>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atctttcatgtcaaaatcat 244
             ||||||||||||||||||||
Sbjct: 54942 atctttcatgtcaaaatcat 54923
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>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    cttctcctgtcctttctctt 428
              ||||||||||||||||||||
Sbjct: 199767 cttctcctgtcctttctctt 199748
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>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence
          Length = 127642

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 agtatttcatttattattca 392
           ||||||||||||||||||||
Sbjct: 413 agtatttcatttattattca 432
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 427      ttttgttctcgggtactttt 446
                ||||||||||||||||||||
Sbjct: 27691343 ttttgttctcgggtactttt 27691324
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>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence
          Length = 211305

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cccaagataaactgtgataa 93
              ||||||||||||||||||||
Sbjct: 160071 cccaagataaactgtgataa 160052
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>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence
          Length = 163117

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   atgcctcctctttcagtatt 378
             ||||||||||||||||||||
Sbjct: 93995 atgcctcctctttcagtatt 93976
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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cccaagataaactgtgataa 93
             ||||||||||||||||||||
Sbjct: 59086 cccaagataaactgtgataa 59067
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>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0005A04
          Length = 140723

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   ttttgttctcgggtactttt 446
             ||||||||||||||||||||
Sbjct: 77209 ttttgttctcgggtactttt 77190
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>gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, complete sequence
          Length = 181941

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   tgaaggcatgcattcttgacagga 271
             ||||||||||| ||||||||||||
Sbjct: 69822 tgaaggcatgctttcttgacagga 69799
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>emb|AL391397.4|CNS06C87 Human chromosome 14 DNA sequence BAC R-625F13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165622

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   tcagtccctctctttagcac 409
             ||||||||||||||||||||
Sbjct: 62011 tcagtccctctctttagcac 61992
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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cccaagataaactgtgataa 93
              ||||||||||||||||||||
Sbjct: 158166 cccaagataaactgtgataa 158147
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>gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, complete sequence
          Length = 175075

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   cttctcctgtcctttctcttttgt 432
             ||||||||||||||| ||||||||
Sbjct: 27933 cttctcctgtcctttttcttttgt 27956
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>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete
             sequence
          Length = 161533

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    tctgggtgaactcactcaggacaa 55
             ||||||| ||||||||||||||||
Sbjct: 80282 tctgggttaactcactcaggacaa 80305
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>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence
          Length = 231000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    cttctcctgtcctttctctt 428
              ||||||||||||||||||||
Sbjct: 183345 cttctcctgtcctttctctt 183364
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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    acaacaaaaatatttcacca 71
             ||||||||||||||||||||
Sbjct: 73257 acaacaaaaatatttcacca 73276
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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
              sequence
          Length = 217241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 248    tgaaggcatgcattcttgacagga 271
              ||||||||||| ||||||||||||
Sbjct: 193023 tgaaggcatgctttcttgacagga 193046
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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     atatttcaccacacccaaga 80
              ||||||||||||||||||||
Sbjct: 167469 atatttcaccacacccaaga 167488
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>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete
             sequence
          Length = 188772

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   ctcctgtcctttctcttttg 431
             ||||||||||||||||||||
Sbjct: 89247 ctcctgtcctttctcttttg 89228
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>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete
             sequence
          Length = 219634

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   acattcttcaatcatctttcatgt 235
             |||||||||||| |||||||||||
Sbjct: 29643 acattcttcaattatctttcatgt 29620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,061,262
Number of Sequences: 3902068
Number of extensions: 6061262
Number of successful extensions: 127478
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127245
Number of HSP's gapped (non-prelim): 233
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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