ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chr... 46 0.086
2gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 44 0.34
3gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, comple... 44 0.34
4ref|XM_763279.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.3
5ref|XM_763280.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.3
6emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein 42 1.3
7emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chro... 42 1.3
8gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.38... 42 1.3
9ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA 40 5.3
10gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 5.3
11gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence 40 5.3
12emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 o... 40 5.3
13emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 ... 40 5.3
14dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 5.3
15gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds 40 5.3
16gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:10980... 40 5.3
17gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complet... 40 5.3
18gb|AC087231.1|AC087231 Caenorhabditis briggsae cosmid CB034P13, ... 40 5.3

>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5'
              end of the PAX2 gene for paired box gene 2 and fifteen CpG
              islands, complete sequence
          Length = 187101

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 295    tacagcgccagaccattcttctt 317
              |||||||||||||||||||||||
Sbjct: 139014 tacagcgccagaccattcttctt 138992



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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 97    acagcagcttggcgtacaaccgtctt 122
             ||||||||||||| ||||||||||||
Sbjct: 13338 acagcagcttggcttacaaccgtctt 13313



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>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence
          Length = 196085

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 38     caagttacagaatattcaacta 59
              ||||||||||||||||||||||
Sbjct: 126156 caagttacagaatattcaacta 126177



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>ref|XM_763279.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_15_12905_13390) partial mRNA
          Length = 486

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  ttgagcaggttctcatcagct 84
           |||||||||||||||||||||
Sbjct: 443 ttgagcaggttctcatcagct 423



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>ref|XM_763280.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_15_13494_12943) partial mRNA
          Length = 552

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  ttgagcaggttctcatcagct 84
           |||||||||||||||||||||
Sbjct: 148 ttgagcaggttctcatcagct 168



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>emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein
          Length = 2790

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  ccagaccattcttcttcatca 322
            |||||||||||||||||||||
Sbjct: 1632 ccagaccattcttcttcatca 1612



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>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 103582

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 325   gaagcaaaactctgaagaacc 345
             |||||||||||||||||||||
Sbjct: 23966 gaagcaaaactctgaagaacc 23986



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>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence
          Length = 149030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   taattatttcccctaaaaatg 222
             |||||||||||||||||||||
Sbjct: 90915 taattatttcccctaaaaatg 90895



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>ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 aagcaaaactctgaagaacc 345
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348



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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     cctaacagcagcttggcgtacaac 116
              ||||||||| ||||||||||||||
Sbjct: 609609 cctaacagctgcttggcgtacaac 609632



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>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence
          Length = 129285

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgagcactgattgcagaggg 145
             ||||||||||||||||||||
Sbjct: 58108 tgagcactgattgcagaggg 58127



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>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the
             3' end of a variant of the gene for expressed in
             hematopoietic cells (heart, liver) (HLL), complete
             sequence
          Length = 100496

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aactaattatttcccctaaa 218
             ||||||||||||||||||||
Sbjct: 64950 aactaattatttcccctaaa 64969



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>emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 in linkage group 1,
             complete sequence
          Length = 183380

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   aagcaaaactctgaagaacc 345
             ||||||||||||||||||||
Sbjct: 49785 aagcaaaactctgaagaacc 49804



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 344     ccttttctgctcggcgcagg 363
               ||||||||||||||||||||
Sbjct: 1379118 ccttttctgctcggcgcagg 1379137



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>gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 aagcaaaactctgaagaacc 345
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311



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>gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:109807 IMAGE:7255283),
           complete cds
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 aagcaaaactctgaagaacc 345
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348



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>gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 aagcaaaactctgaagaacc 345
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311



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>gb|AC087231.1|AC087231 Caenorhabditis briggsae cosmid CB034P13, complete sequence
          Length = 71462

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     ttgcgaaaacatttatatctttcc 31
             |||||||||||||||| |||||||
Sbjct: 68882 ttgcgaaaacatttatttctttcc 68859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,935,873
Number of Sequences: 3902068
Number of extensions: 3935873
Number of successful extensions: 80251
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80201
Number of HSP's gapped (non-prelim): 50
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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