ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YLAJ_BACSU (O07634) Hypothetical lipoprotein ylaJ precursor 31 2.2
2VAMPL_ARATH (Q84WF5) Probable VAMP-like protein At1g33485 31 2.2
3SYL1_SULSO (P58176) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leuci... 30 4.9
4PGMI_SULSO (Q97WE5) Bifunctional phosphoglucose/phosphomannose i... 30 4.9
5VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein ... 29 8.3
6BC10_RAT (P62950) Bladder cancer-associated protein (Bladder can... 29 8.3
7BC10_PONPY (Q5R692) Bladder cancer-associated protein homolog (B... 29 8.3
8BC10_MOUSE (P62951) Bladder cancer-associated protein (Bladder c... 29 8.3
9BC10_HUMAN (P62952) Bladder cancer-associated protein (Bladder c... 29 8.3
10BC10_FELCA (P62953) Bladder cancer-associated protein (Bladder c... 29 8.3
11BC10_BOVIN (P62954) Bladder cancer-associated protein 29 8.3

>YLAJ_BACSU (O07634) Hypothetical lipoprotein ylaJ precursor|
          Length = 209

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 267 VLIKMTSAKAQLTNLEERISRAHPVADILKDLHCILGRVI 386
           V+I      ++L  +   IS  HPV  IL +L  I+GRV+
Sbjct: 121 VVIADPDTVSRLREMSREISEGHPVTGILDELAAIVGRVL 160



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>VAMPL_ARATH (Q84WF5) Probable VAMP-like protein At1g33485|
          Length = 255

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 167 SGAIS----KRKVSKNLPTTTHFEIHICLPLISFNIQGTNQDDISQSAAHQLGGENFQ 328
           SG+IS    + ++ + L  +  F+ H CLPL S +I G  Q   S S A  LG  N Q
Sbjct: 106 SGSISFSNVQDQIVRRLIASLEFD-HTCLPLSSPSIDGAEQSYASNSKAPLLGRSNKQ 162



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>SYL1_SULSO (P58176) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leucine--tRNA|
           ligase 1) (LeuRS 1)
          Length = 934

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = +3

Query: 267 VLIKMTSAKAQLTNLEERISRAHPVADILKDLHCILGRVIQSEIQVEISSRSPDWTFSST 446
           V I +TS    L +L+   +  +P+A+ LK ++ ++ R++    +++    + +W  S  
Sbjct: 639 VRIALTSTSDLLQDLDFNENLVNPIAEQLKKIYDLIDRLLSINTEIKELRTADEWISSKV 698

Query: 447 RRV 455
           R +
Sbjct: 699 RDI 701



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>PGMI_SULSO (Q97WE5) Bifunctional phosphoglucose/phosphomannose isomerase|
           (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI)
           (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate
           isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI)
          Length = 296

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 90  TKRII*SEQNAANYASPPLITIHKSILVQFQKEK*AKICRLPHTLRSTFAYHL*VSTFKV 269
           T   I   +NA    S  +I     IL +  KEK  K+ ++P   ++ +A+      F  
Sbjct: 71  TSETINDVENAVKAGSEVIIITSGGILEKLAKEKSLKLIKIPSGFQTRYAFPY---LFTP 127

Query: 270 LIKMTSAK 293
           LIKMT+ +
Sbjct: 128 LIKMTTKR 135



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>VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein VPS8|
          Length = 1274

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 167 SGAISKRKVSKNLP---TTTHFEIHICLPLISFNIQGTNQDDISQS 295
           S  IS+ K+S NL    TTTHF + +  P +S   Q T +  +  S
Sbjct: 256 SPLISREKISTNLLSVLTTTHFALILLSPHVSLMFQETVEPSVQNS 301



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>BC10_RAT (P62950) Bladder cancer-associated protein (Bladder cancer 10 kDa|
           protein) (Bc10)
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48



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>BC10_PONPY (Q5R692) Bladder cancer-associated protein homolog (Bladder cancer|
           10 kDa protein homolog) (Bc10)
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48



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>BC10_MOUSE (P62951) Bladder cancer-associated protein (Bladder cancer 10 kDa|
           protein) (Bc10)
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48



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>BC10_HUMAN (P62952) Bladder cancer-associated protein (Bladder cancer 10 kDa|
           protein) (Bc10)
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48



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>BC10_FELCA (P62953) Bladder cancer-associated protein (Bladder cancer 10 kDa|
           protein) (Bc10)
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48



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>BC10_BOVIN (P62954) Bladder cancer-associated protein|
          Length = 87

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 291 WLMSS*LVP*MLKLISGRQMWISKCVVVGKFLLTFLFEIAPEWICEL 151
           WL+   L+P  L       +W S  + +G +LL+FL E  P  IC L
Sbjct: 6   WLLPVLLIPKPLN----PALWFSHSMFMGFYLLSFLLERKPCTICAL 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,516,011
Number of Sequences: 219361
Number of extensions: 1561412
Number of successful extensions: 3631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3631
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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