ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SSB_WIGBR (Q8D254) Single-stranded DNA-binding protein (SSB) (He... 29 6.2
2LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3)... 28 8.1

>SSB_WIGBR (Q8D254) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 163

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 12  QDQAIHTISSP*TVTERSITTYQV-RDKNGEEEKENTTWLFYRDERHRFIVF 164
           QD  +  I +   +T  S+ T +  RDKN  E KE T W       HR I+F
Sbjct: 17  QDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTEW-------HRVILF 61



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>LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3) (Pancreatic|
           lipase) (PL)
          Length = 450

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 61  DPLQPTRSEIRMGRKRRRILHGF 129
           DP   T S  RM RK R I+HGF
Sbjct: 56  DPSTITNSNFRMDRKTRFIIHGF 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,362,223
Number of Sequences: 219361
Number of extensions: 768778
Number of successful extensions: 2097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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